Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QJ050_RS18550 Genome accession   NZ_CP124840
Coordinates   4044883..4046322 (+) Length   479 a.a.
NCBI ID   WP_099994508.1    Uniprot ID   A0AAX3VN16
Organism   Aeromonas salmonicida strain 29     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4039883..4051322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJ050_RS18520 (QJ050_18520) mlaF 4040460..4041260 (-) 801 WP_282789569.1 phospholipid ABC transporter ATP-binding protein MlaF -
  QJ050_RS18525 (QJ050_18525) - 4041468..4042463 (+) 996 WP_034524103.1 KpsF/GutQ family sugar-phosphate isomerase -
  QJ050_RS18530 (QJ050_18530) kdsC 4042463..4043017 (+) 555 WP_005314419.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  QJ050_RS18535 (QJ050_18535) lptC 4043014..4043574 (+) 561 WP_005314417.1 LPS export ABC transporter periplasmic protein LptC -
  QJ050_RS18540 (QJ050_18540) lptA 4043561..4044088 (+) 528 WP_005314414.1 lipopolysaccharide transport periplasmic protein LptA -
  QJ050_RS18545 (QJ050_18545) lptB 4044092..4044817 (+) 726 WP_005314412.1 LPS export ABC transporter ATP-binding protein -
  QJ050_RS18550 (QJ050_18550) rpoN/rpoN1 4044883..4046322 (+) 1440 WP_099994508.1 RNA polymerase factor sigma-54 Machinery gene
  QJ050_RS18555 (QJ050_18555) hpf 4046344..4046631 (+) 288 WP_005305957.1 ribosome hibernation promoting factor -
  QJ050_RS18560 (QJ050_18560) ptsN 4046634..4047080 (+) 447 WP_005314406.1 PTS IIA-like nitrogen regulatory protein PtsN -
  QJ050_RS18565 (QJ050_18565) rapZ 4047123..4047989 (+) 867 WP_005314405.1 RNase adapter RapZ -
  QJ050_RS18570 (QJ050_18570) npr 4048010..4048282 (+) 273 WP_005314403.1 PTS phosphocarrier protein NPr -
  QJ050_RS18575 (QJ050_18575) - 4048301..4050205 (-) 1905 WP_282789570.1 PRD domain-containing protein -
  QJ050_RS18580 (QJ050_18580) - 4050310..4051050 (-) 741 WP_282789571.1 KDGP aldolase family protein -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53877.82 Da        Isoelectric Point: 4.3484

>NTDB_id=828294 QJ050_RS18550 WP_099994508.1 4044883..4046322(+) (rpoN/rpoN1) [Aeromonas salmonicida strain 29]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEVQETSPEEPVDDSQLDSSDAMAQDQMP
DELPVDTTWEDVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDLDAAIALAIIDAIDDSGYLTVSLED
IQAAVSSEDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYAPELPWLNEAREVIKEHMDLLGNRDYRTLARK
TKLKESDLKEVLDLIQQLEPRPGNGIIQSDSQYVIPDVTVVKKGNKWVVELNPDSAPRIRVNETYAAMARQARTSQDTQF
IRSHLQEAKWFIKSLESRNDTLLKVATCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=828294 QJ050_RS18550 WP_099994508.1 4044883..4046322(+) (rpoN/rpoN1) [Aeromonas salmonicida strain 29]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGATAACAATCCTTTGCTTGAGCAAGAGGAGAATGAGG
TTCAGGAGACCAGCCCGGAAGAGCCCGTCGACGACAGTCAGCTCGACTCCAGCGATGCCATGGCCCAGGATCAGATGCCG
GACGAACTGCCGGTAGATACCACCTGGGAAGATGTCTATTCAGCCGGCACAGCCCAGAGCGCAGGCCCCATCCACGATGG
GGAGGACAGCGTCTATCAAGGGGAAACCACCGAGAACCTGCAGGACTATCTGCTGTGGCAGATGCGCCTCACCCCGTTCA
GCGATCTGGATGCCGCCATTGCGCTGGCCATCATAGATGCCATCGATGACTCCGGTTATCTGACCGTCTCTCTCGAAGAT
ATACAGGCGGCGGTGAGCAGCGAGGATGTCGAGGTGGAACTCGACGAGGTCGAGGCAGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCGCGCTCGGTGCAGGAGTGTCTGCTGATCCAGCTTGGCCAGTACGCTCCTGAACTGCCCT
GGCTCAATGAGGCCAGGGAGGTGATCAAGGAGCACATGGACTTGCTCGGCAACCGTGATTACCGCACCCTGGCCCGCAAG
ACCAAGCTCAAGGAGAGTGACCTCAAGGAGGTGCTGGACCTTATCCAGCAACTGGAGCCCAGGCCGGGTAACGGCATCAT
ACAGAGTGACTCCCAGTACGTGATCCCGGATGTCACCGTCGTCAAGAAGGGCAACAAATGGGTCGTTGAACTCAACCCTG
ATTCTGCACCGCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGTCAGGCGCGTACCAGCCAGGATACCCAGTTC
ATTCGCTCCCACTTGCAAGAAGCCAAGTGGTTCATCAAGAGTCTGGAGAGTCGCAACGACACCCTGCTCAAGGTGGCGAC
CTGTATTGTCGAGCAACAACAGGGCTTTTTCGAGTATGGTGAAGAAGCCATGAAGCCCATGGTGCTCAACGATATCGCCG
AGGCGGTGGAGATGCATGAGTCGACCATTTCCAGGGTAACGACCCAGAAATACATGCATACCCCCCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGTCATGTGAACACAGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTGATCAA
GAAGCTGGTGACGGCGGAGAATCCCGCCAAGCCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.972

100

0.489