Detailed information NTG0828152

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QLG18_RS21420
• Genome accession: NZ_CP124824
• Coordinates: 4331339..4332139 (+)
• Length: 266 a.a.
• NCBI ID: WP_032414527.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain H53
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4326339..4337139

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QLG18_RS21385 (QLG18_21385)	gspH	4326495..4327010 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
QLG18_RS21390 (QLG18_21390)	gspI	4327007..4327372 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
QLG18_RS21395 (QLG18_21395)	gspJ	4327369..4327965 (+)	597	WP_009309266.1	type II secretion system minor pseudopilin GspJ	-
QLG18_RS21400 (QLG18_21400)	gspK	4327962..4328948 (+)	987	WP_077255927.1	type II secretion system minor pseudopilin GspK	-
QLG18_RS21405 (QLG18_21405)	gspL	4328935..4330128 (+)	1194	WP_101991231.1	type II secretion system protein GspL	-
QLG18_RS21410 (QLG18_21410)	-	4330121..4330606 (+)	486	WP_025368434.1	type II secretion system protein M	-
QLG18_RS21415 (QLG18_21415)	-	4330596..4331342 (+)	747	WP_004145897.1	type II secretion system protein N	-
QLG18_RS21420 (QLG18_21420)	pilD	4331339..4332139 (+)	801	WP_032414527.1	A24 family peptidase	Machinery gene
QLG18_RS21425 (QLG18_21425)	hrpB	4332187..4334616 (-)	2430	WP_042939508.1	ATP-dependent helicase HrpB	-
QLG18_RS21430 (QLG18_21430)	thpR	4334689..4335225 (+)	537	WP_042939509.1	RNA 2',3'-cyclic phosphodiesterase	-
QLG18_RS21435 (QLG18_21435)	sfsA	4335225..4335941 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
QLG18_RS21440 (QLG18_21440)	dksA	4336104..4336559 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=828152 QLG18_RS21420 WP_032414527.1 4331339..4332139(+) (pilD) [Klebsiella pneumoniae strain H53]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=828152 QLG18_RS21420 WP_032414527.1 4331339..4332139(+) (pilD) [Klebsiella pneumoniae strain H53]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGTCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421