Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QLG16_RS08360 Genome accession   NZ_CP124809
Coordinates   1768910..1769524 (+) Length   204 a.a.
NCBI ID   WP_032936287.1    Uniprot ID   A0A0J1N982
Organism   Citrobacter freundii strain CF13     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1763910..1774524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLG16_RS08340 (QLG16_08340) - 1764292..1766052 (-) 1761 WP_003035878.1 Lon protease family protein -
  QLG16_RS08345 (QLG16_08345) matP 1766238..1766690 (+) 453 WP_003035881.1 macrodomain Ter protein MatP -
  QLG16_RS08350 (QLG16_08350) ompA 1766779..1767825 (-) 1047 WP_003035883.1 porin OmpA -
  QLG16_RS08355 (QLG16_08355) sulA 1768183..1768692 (-) 510 WP_003035886.1 SOS-induced cell division inhibitor SulA -
  QLG16_RS08360 (QLG16_08360) sxy/tfoX 1768910..1769524 (+) 615 WP_032936287.1 TfoX/Sxy family DNA transformation protein Regulator
  QLG16_RS08365 (QLG16_08365) yccS 1769502..1771655 (-) 2154 WP_103848632.1 YccS family putative transporter -
  QLG16_RS08370 (QLG16_08370) - 1771674..1772120 (-) 447 WP_282626280.1 YccF domain-containing protein -
  QLG16_RS08375 (QLG16_08375) helD 1772246..1774300 (+) 2055 WP_282626281.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23216.59 Da        Isoelectric Point: 8.6049

>NTDB_id=828070 QLG16_RS08360 WP_032936287.1 1768910..1769524(+) (sxy/tfoX) [Citrobacter freundii strain CF13]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPESGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=828070 QLG16_RS08360 WP_032936287.1 1768910..1769524(+) (sxy/tfoX) [Citrobacter freundii strain CF13]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACTGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACCATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAATCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1N982

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686