Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PMI20_RS12180 Genome accession   NZ_CP124732
Coordinates   2704314..2704949 (+) Length   211 a.a.
NCBI ID   WP_007931657.1    Uniprot ID   A0AAX2DUM3
Organism   Pseudomonas sp. GM17     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2699314..2709949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMI20_RS12160 (PMI20_012160) - 2699559..2700491 (+) 933 WP_007931649.1 ABC transporter ATP-binding protein -
  PMI20_RS12165 (PMI20_012165) - 2700488..2701267 (+) 780 WP_007931651.1 ABC transporter permease -
  PMI20_RS12170 (PMI20_012170) - 2701316..2701831 (-) 516 WP_007931653.1 DUF2062 domain-containing protein -
  PMI20_RS12175 (PMI20_012175) comA 2701980..2704211 (+) 2232 WP_007931655.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PMI20_RS12180 (PMI20_012180) exbB 2704314..2704949 (+) 636 WP_007931657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PMI20_RS12185 (PMI20_012185) - 2704946..2705374 (+) 429 WP_007931660.1 biopolymer transporter ExbD -
  PMI20_RS12190 (PMI20_012190) lpxK 2705374..2706384 (+) 1011 WP_007931662.1 tetraacyldisaccharide 4'-kinase -
  PMI20_RS12195 (PMI20_012195) - 2706407..2706592 (+) 186 WP_007931663.1 Trm112 family protein -
  PMI20_RS12200 (PMI20_012200) kdsB 2706589..2707353 (+) 765 WP_007931665.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PMI20_RS12205 (PMI20_012205) - 2707353..2707817 (+) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  PMI20_RS12210 (PMI20_012210) murB 2707814..2708833 (+) 1020 WP_007931669.1 UDP-N-acetylmuramate dehydrogenase -
  PMI20_RS12215 (PMI20_012215) - 2709082..2709552 (+) 471 WP_007931672.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22947.12 Da        Isoelectric Point: 8.1069

>NTDB_id=827786 PMI20_RS12180 WP_007931657.1 2704314..2704949(+) (exbB) [Pseudomonas sp. GM17]
MWELVKSGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=827786 PMI20_RS12180 WP_007931657.1 2704314..2704949(+) (exbB) [Pseudomonas sp. GM17]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGCGTCACCCCGCCTCATCTGCTGGGCCAGGTGTGGCGCTGGATCAAGGACA
AACAGCTGAACAAGGACAAGCTCAAGGAACTGCGCGCCCATTCGCCCCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCTTGCTGGGTACAGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGGATGACCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGTTGATCACCACCGCG
TCCGGCCTGATGGTCGGTATTCCGGCAGTGTTCTTCCACCGTTTCCTGCAACGTCGGGTCGATGAGCTGGTGGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867