Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PMI20_RS12175 Genome accession   NZ_CP124732
Coordinates   2701980..2704211 (+) Length   743 a.a.
NCBI ID   WP_007931655.1    Uniprot ID   -
Organism   Pseudomonas sp. GM17     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2696980..2709211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMI20_RS12150 (PMI20_012150) - 2698101..2698760 (+) 660 WP_007931646.1 transglutaminase family protein -
  PMI20_RS12155 (PMI20_012155) - 2698803..2699426 (+) 624 WP_007931647.1 glutathione S-transferase -
  PMI20_RS12160 (PMI20_012160) - 2699559..2700491 (+) 933 WP_007931649.1 ABC transporter ATP-binding protein -
  PMI20_RS12165 (PMI20_012165) - 2700488..2701267 (+) 780 WP_007931651.1 ABC transporter permease -
  PMI20_RS12170 (PMI20_012170) - 2701316..2701831 (-) 516 WP_007931653.1 DUF2062 domain-containing protein -
  PMI20_RS12175 (PMI20_012175) comA 2701980..2704211 (+) 2232 WP_007931655.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PMI20_RS12180 (PMI20_012180) exbB 2704314..2704949 (+) 636 WP_007931657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PMI20_RS12185 (PMI20_012185) - 2704946..2705374 (+) 429 WP_007931660.1 biopolymer transporter ExbD -
  PMI20_RS12190 (PMI20_012190) lpxK 2705374..2706384 (+) 1011 WP_007931662.1 tetraacyldisaccharide 4'-kinase -
  PMI20_RS12195 (PMI20_012195) - 2706407..2706592 (+) 186 WP_007931663.1 Trm112 family protein -
  PMI20_RS12200 (PMI20_012200) kdsB 2706589..2707353 (+) 765 WP_007931665.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PMI20_RS12205 (PMI20_012205) - 2707353..2707817 (+) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  PMI20_RS12210 (PMI20_012210) murB 2707814..2708833 (+) 1020 WP_007931669.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 81096.27 Da        Isoelectric Point: 10.0628

>NTDB_id=827785 PMI20_RS12175 WP_007931655.1 2701980..2704211(+) (comA) [Pseudomonas sp. GM17]
MRTGMLALAAGLLCLRFLPALPAIGWLAVLPVVALMLLPFRTYPLALFLLGLAWACISAQSALDDRLAEPLDGQTRWLEG
RVVGLPQQAEGLVRFELEDGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLVAAEGGWRARIRQRLLQVDARGRAGGLAALVLGDGSGLSQEDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLFLAVPYLGEGLLWLAGGLLDLLFRGLTLLAAQWPAWVAPAIPLWAWSISALGALLLLLPAGVPLRPLGWPMLLLVV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRLGDSDLGARVVLPSLRKLGVARLDLMLLSHADADHAGGA
EAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWAGAQNGNQKSCVMQVEAQGERLLLTGDIDALAE
RALLDTPLAVETRWLQAPHHGSRSSSSVALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQRSAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=827785 PMI20_RS12175 WP_007931655.1 2701980..2704211(+) (comA) [Pseudomonas sp. GM17]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGTGCCTGCGCTTTTTGCCGGCGCTACCAGCGATCGGATGGCT
GGCGGTGCTACCGGTAGTGGCCTTGATGCTGTTGCCGTTTCGCACCTATCCATTGGCCCTTTTTCTGTTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATCGGCGCTGGATGATCGTTTGGCGGAACCGCTCGACGGGCAGACTCGCTGGCTCGAAGGT
CGAGTGGTGGGGCTGCCGCAGCAGGCCGAGGGGCTGGTGCGTTTCGAGCTGGAAGACGGGCGGGCGCGGCGCGGCCGGAT
CCCGCAACGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTGAAGCTCA
AGCGACCTGCCGGCCTGGTCAATCTGCAAGCCTTCGATCATGAGGCCTGGTTGCTGGCCCAGCGCATCGGCGCCACGGGC
ACGGTCAAGGATGGGCAACTGCTGGTTGCCGCGGAGGGCGGCTGGCGCGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TGCCCGCGGGCGCGCCGGCGGCCTGGCGGCCCTGGTACTGGGCGACGGCTCCGGGTTGAGCCAGGAAGACTGGCGTGTCT
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGCTTGCTGGCCGCAGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGCTGGCCCTGGCTGCCCTGGGCCTGCGGGCTGGCATTCGCCTC
GGCCCTGGGGTACGGGTTGCTGGCGGGGTTCGATGTGCCGGTGCGCCGTGCCTGTGTGATGGTGGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGCCACCTGGGTGCCTGGTGGCCGTTCTTGCTGGCATTGAATGCGGTGCTGTTGTTCGAGCCGCTG
GCCAGCCTGCAGCCAGGCTTCTGGCTGTCCTTTACCGCGGTGGCGGTGTTGATCCTGATCTTCGGTGGGCGTCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGCATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGTCTCAGCGGGCCGCTGGCCAATTTGCTGGCGGAACCCTGGATCAGCCTGCTGGTGCTGCCGCCGGCGTTG
CTCGGCACCTTGTTCCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGCTTGCTGGACCTGCTGTT
CCGCGGCCTGACCCTGCTGGCTGCCCAGTGGCCGGCGTGGGTAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGAGCCTTGCTGCTGTTGCTGCCTGCGGGCGTGCCGCTGCGTCCCTTGGGCTGGCCGATGCTGCTGTTGGTGGTG
TTCCCGCCGAAAAACACGCTGCCATATGGCGAGGCGGAAGTCTGGCAACTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
ACGGACTCGCGAGCACGCGATGCTGTATGACGCCGGTCCGCGTTTGGGGGACTCCGACCTGGGCGCGCGGGTGGTGCTGC
CGTCCTTGCGCAAGCTGGGCGTCGCGCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGTGGCGCC
GAGGCCATTCAGCGAGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGTTTGCCGGCATATTTGCCGGCAGA
GCCTTGCGCCAGCGGCGAGCAGTGGCAATGGGACGGGGTGCGCTTTTCCCTGTGGCAATGGGCAGGTGCGCAGAACGGTA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCCAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCTGGCCGAA
CGTGCCTTGCTGGATACCCCGCTGGCCGTCGAGACCCGCTGGTTGCAGGCGCCGCACCACGGCAGCCGCAGCTCGTCGTC
CGTGGCCCTGCTCAAGGCCCTTGCGCCCTCGGCGGTGCTGATCTCCCGTGGGCACGGCAATGGGTTTGGGCATCCGCACC
CGCAGGTCGTCGAACGTTATCGCCAGCAAAGGAGCGCCATTTACGACAGTGCGGAGCAGGGAGCGCTGCGGCTGATGCTG
GGCACTTACACCGAACCGACGAGCCTGCGGGCGCAGCGACGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)

Domain of unknown function (DUF4131) (DUF4131)

(19-167)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

64.256

96.77

0.622