Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   PMI20_RS01060 Genome accession   NZ_CP124732
Coordinates   241207..241614 (-) Length   135 a.a.
NCBI ID   WP_007929962.1    Uniprot ID   A0AAJ0ZLS6
Organism   Pseudomonas sp. GM17     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 236207..246614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMI20_RS01045 (PMI20_001045) - 238086..240122 (-) 2037 WP_007929959.1 methyl-accepting chemotaxis protein -
  PMI20_RS01050 (PMI20_001050) - 240247..240786 (-) 540 WP_007929960.1 chemotaxis protein CheW -
  PMI20_RS01055 (PMI20_001055) pilH 240798..241163 (-) 366 WP_007929961.1 twitching motility response regulator PilH -
  PMI20_RS01060 (PMI20_001060) pilG 241207..241614 (-) 408 WP_007929962.1 twitching motility response regulator PilG Regulator
  PMI20_RS01065 (PMI20_001065) gshB 241851..242825 (+) 975 WP_007929968.1 glutathione synthase -
  PMI20_RS01070 (PMI20_001070) - 242996..243895 (+) 900 WP_007929970.1 energy transducer TonB -
  PMI20_RS01075 (PMI20_001075) - 244088..244657 (+) 570 WP_007929972.1 YqgE/AlgH family protein -
  PMI20_RS01080 (PMI20_001080) ruvX 244657..245094 (+) 438 WP_007929974.1 Holliday junction resolvase RuvX -
  PMI20_RS01085 (PMI20_001085) pyrR 245216..245722 (+) 507 WP_007929976.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14681.06 Da        Isoelectric Point: 7.2445

>NTDB_id=827773 PMI20_RS01060 WP_007929962.1 241207..241614(-) (pilG) [Pseudomonas sp. GM17]
MEQQSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAVDGFEALAKIADNHPGIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=827773 PMI20_RS01060 WP_007929962.1 241207..241614(-) (pilG) [Pseudomonas sp. GM17]
ATGGAACAGCAATCCAGCGCCCTCAAGGTGATGGTGATCGATGATTCGAAGACGATTCGCCGCACGGCCGAAACGCTGCT
GAAGAATGTGGGCTGTGAAGTCATTACCGCGGTCGACGGTTTCGAGGCGCTGGCCAAGATCGCCGACAACCACCCGGGCA
TCATTTTCGTCGACATCATGATGCCGCGGCTCGATGGCTATCAGACCTGCGCGTTGATCAAGAACAACAGCGCGTTCAAG
TCCACGCCGGTGATTATGCTGTCCTCCAAGGACGGTCTGTTCGACAAGGCCAAGGGTCGCATCGTCGGCTCTGACCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAGCTGCTGAGCGCGATCAAGGCCCATGTGCCGGGGTTCGCCGCAGTAGAACAAG
CACATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76.8

92.593

0.711
  vicR Streptococcus mutans UA159

41.27

93.333

0.385