Detailed information NTG0827187

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: P7I92_RS24400
• Genome accession: NZ_CP124654
• Coordinates: 5235193..5236065 (+)
• Length: 290 a.a.
• NCBI ID: WP_134279316.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain 2021CK-01851
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5230193..5241065

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P7I92_RS24385 (P7I92_24385)	-	5231576..5232040 (-)	465	WP_124089607.1	pilin	-
P7I92_RS24390 (P7I92_24390)	pilB	5232271..5233971 (+)	1701	WP_128672463.1	type IV-A pilus assembly ATPase PilB	Machinery gene
P7I92_RS24395 (P7I92_24395)	pilC	5233975..5235192 (+)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
P7I92_RS24400 (P7I92_24400)	pilD	5235193..5236065 (+)	873	WP_134279316.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
P7I92_RS24405 (P7I92_24405)	coaE	5236062..5236673 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
P7I92_RS24410 (P7I92_24410)	yacG	5236670..5236870 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
P7I92_RS24415 (P7I92_24415)	-	5236907..5237116 (-)	210	WP_003094660.1	hypothetical protein	-
P7I92_RS24420 (P7I92_24420)	-	5237222..5237911 (-)	690	WP_003094662.1	energy-coupling factor ABC transporter permease	-
P7I92_RS24425 (P7I92_24425)	-	5237908..5238378 (-)	471	WP_171892802.1	FAD/FMN-containing dehydrogenase	-
P7I92_RS24430 (P7I92_24430)	-	5238375..5238800 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
P7I92_RS24435 (P7I92_24435)	-	5238933..5239562 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
P7I92_RS24440 (P7I92_24440)	-	5239559..5240008 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
P7I92_RS24445 (P7I92_24445)	-	5240034..5240204 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31873.90 Da
• Isoelectric Point: 7.7068

>NTDB_id=827187 P7I92_RS24400 WP_134279316.1 5235193..5236065(+) (pilD) [Pseudomonas aeruginosa strain 2021CK-01851]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESSTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=827187 P7I92_RS24400 WP_134279316.1 5235193..5236065(+) (pilD) [Pseudomonas aeruginosa strain 2021CK-01851]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATACCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTATGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACTATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCAGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469