Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   QF117_RS18450 Genome accession   NZ_CP124614
Coordinates   2754841..2755458 (+) Length   205 a.a.
NCBI ID   WP_282387495.1    Uniprot ID   -
Organism   Vibrio sp. YMD68     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2749841..2760458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF117_RS18430 (QF117_18430) - 2750197..2751174 (-) 978 WP_282387490.1 ABC transporter ATP-binding protein -
  QF117_RS18435 (QF117_18435) - 2751349..2753019 (-) 1671 WP_282387492.1 SulP family inorganic anion transporter -
  QF117_RS18440 (QF117_18440) can 2753246..2753911 (+) 666 WP_282387494.1 carbonate dehydratase -
  QF117_RS18445 (QF117_18445) hpt 2753984..2754514 (-) 531 WP_348984834.1 hypoxanthine phosphoribosyltransferase -
  QF117_RS18450 (QF117_18450) opaR 2754841..2755458 (+) 618 WP_282387495.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  QF117_RS18455 (QF117_18455) lpdA 2755542..2756969 (-) 1428 WP_017036666.1 dihydrolipoyl dehydrogenase -
  QF117_RS18460 (QF117_18460) aceF 2757231..2759147 (-) 1917 WP_282387500.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23774.04 Da        Isoelectric Point: 6.2878

>NTDB_id=826780 QF117_RS18450 WP_282387495.1 2754841..2755458(+) (opaR) [Vibrio sp. YMD68]
MDSIAKRPRTRLSPQKRKLQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNYVVRQFSNFLT
DHIDLDLHAKQNLRNVTAGMVNLVIQDCHWLKVWFEWSASTRDEVWPLFVSSNRTNQMLVKNMFINAINRDEVCSDHDPD
HLTNLFHGICYSLFVQSNRLQSEASMEQLTNSYLDMLCIYNHDNI

Nucleotide


Download         Length: 618 bp        

>NTDB_id=826780 QF117_RS18450 WP_282387495.1 2754841..2755458(+) (opaR) [Vibrio sp. YMD68]
ATGGATTCTATAGCAAAAAGACCACGAACAAGGCTGTCTCCACAAAAGCGTAAATTACAACTGATGGAAATTGCATTAGA
AGTATTTGCAAGGCGCGGAATTGGGCGTGGGGGACATGCTGATATAGCAGAAATCGCGCAAGTTTCTGTGGCAACCGTCT
TCAATTACTTCCCAACACGTGAAGATCTCGTCGATGATGTACTCAATTACGTCGTACGTCAGTTTTCAAACTTTTTAACT
GATCATATCGATTTGGATTTACACGCAAAGCAGAACCTACGTAACGTTACCGCTGGAATGGTGAATCTTGTGATCCAAGA
TTGCCATTGGCTGAAAGTATGGTTTGAATGGAGTGCCTCAACCAGAGACGAAGTGTGGCCTCTGTTTGTGTCATCGAATA
GGACTAACCAGATGTTGGTCAAAAATATGTTCATCAATGCCATCAATCGTGATGAAGTGTGCAGTGATCACGATCCTGAC
CATCTCACTAATCTATTTCATGGCATCTGCTATTCATTATTTGTTCAATCAAACCGGCTCCAAAGTGAGGCTTCGATGGA
ACAACTCACCAACAGCTACCTAGATATGTTGTGTATTTACAACCACGACAACATATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

79.412

99.512

0.79
  hapR Vibrio cholerae C6706

74.5

97.561

0.727
  hapR Vibrio cholerae strain A1552

74.5

97.561

0.727