Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   QF117_RS10250 Genome accession   NZ_CP124614
Coordinates   894340..895731 (+) Length   463 a.a.
NCBI ID   WP_282388864.1    Uniprot ID   -
Organism   Vibrio sp. YMD68     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 889340..900731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF117_RS10230 (QF117_10230) rsxB 889967..890557 (-) 591 WP_282388860.1 electron transport complex subunit RsxB -
  QF117_RS10235 (QF117_10235) rsxA 890557..891138 (-) 582 WP_282388862.1 electron transport complex subunit RsxA -
  QF117_RS10245 (QF117_10245) uvrB 892037..894067 (+) 2031 WP_282388863.1 excinuclease ABC subunit UvrB -
  QF117_RS10250 (QF117_10250) luxO 894340..895731 (+) 1392 WP_282388864.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  QF117_RS10255 (QF117_10255) luxU 895731..896072 (+) 342 WP_282388865.1 quorum-sensing phosphorelay protein LuxU -
  QF117_RS10260 (QF117_10260) - 896092..896982 (-) 891 WP_282388866.1 YvcK family protein -
  QF117_RS10265 (QF117_10265) moaA 897365..898354 (+) 990 WP_282388868.1 GTP 3',8-cyclase MoaA -
  QF117_RS10270 (QF117_10270) moaB 898432..898944 (+) 513 WP_282388869.1 molybdenum cofactor biosynthesis protein B -
  QF117_RS10275 (QF117_10275) moaC 898960..899439 (+) 480 WP_282388870.1 cyclic pyranopterin monophosphate synthase MoaC -
  QF117_RS10280 (QF117_10280) moaD 899436..899681 (+) 246 WP_282388871.1 molybdopterin synthase sulfur carrier subunit -
  QF117_RS10285 (QF117_10285) moaE 899683..900144 (+) 462 WP_282388872.1 molybdopterin synthase catalytic subunit MoaE -
  QF117_RS10290 (QF117_10290) nrtS 900366..900581 (+) 216 WP_282388873.1 nitrate/nitrite transporter NrtS -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 51495.07 Da        Isoelectric Point: 5.9220

>NTDB_id=826770 QF117_RS10250 WP_282388864.1 894340..895731(+) (luxO) [Vibrio sp. YMD68]
MQQLSDVHKSKYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDALDSLKNRTPDLILLDLRLPDMTGMDVLESAKQIH
PDVPVIFMTAHGSIDTAVEAMRLGAQDFLIKPCEADRLRVTVNNAIRKASKLKNKDDYPGNQNYQGFIGSSHMMQAVYRT
IDSAATSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGFMSNEEGKGFVRLSPEVVECFNRFEWPGNVRQLQNVLRNVVVLNNGKEITLSMLPPPLNMPMDNQI
RMQPSVKEQASVHDIFPLWQTEKAAIEQAIEACEGNIPRAAGYLDVSPSTIYRKLQAWNNVKP

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=826770 QF117_RS10250 WP_282388864.1 894340..895731(+) (luxO) [Vibrio sp. YMD68]
ATGCAGCAACTGTCAGATGTACATAAATCTAAATATTTATTGATGGTAGAGGATACCGCGTCGGTCGCGGCCCTGTATCG
ATCTTACCTCACCCCGCTAGGTATAGACATTAATATTGTCGGAACGGGGCGAGATGCGCTTGATAGCTTAAAGAATCGAA
CGCCCGACCTTATCTTGCTTGACTTACGGTTGCCAGATATGACGGGGATGGACGTCCTAGAAAGTGCGAAGCAAATTCAC
CCTGACGTGCCGGTTATTTTTATGACAGCCCACGGCTCTATCGATACCGCCGTTGAAGCGATGCGTTTAGGCGCTCAGGA
CTTTCTTATTAAGCCTTGTGAAGCGGATCGTCTGCGTGTCACGGTGAATAATGCTATTCGTAAGGCGAGTAAGCTTAAAA
ACAAAGATGACTATCCAGGTAATCAAAACTACCAAGGTTTCATTGGCAGCAGTCACATGATGCAAGCGGTCTACCGCACG
ATTGACTCCGCCGCCACCAGTAAAGCAAGTATCTTCATTACCGGAGAAAGTGGTACCGGTAAAGAAGTCTGCGCCGAAGC
GATTCATGCGGCCAGCAAGCGTGGTGATAAACCCTTTATTGCGATTAACTGTGCGGCTATCCCTAAAGATCTGATTGAGA
GTGAGCTGTTTGGTCACGTGAAGGGTGCATTTACCGGCGCGGCGACCGATAGGCAGGGGGCCGCAGAACTCGCTGACGGA
GGCACTCTGTTTCTCGACGAGTTATGTGAAATGGACCTCGATTTACAAACTAAATTACTACGCTTTATTCAAACGGGGAC
GTTTCAAAAAGTAGGTTCGTCTAAAATGAAAAGTGTGGATGTTCGCTTTGTGTGTGCAACCAACCGAGATCCTTGGAAAG
AAGTCCAAGAAGGGCGCTTTAGGGAAGATCTCTACTACCGCCTCTATGTTATCCCGCTTCATTTACCGCCTTTGCGTGAG
CGTGGGGAAGACGTGATAGAGATTGCTTATTCATTATTAGGTTTTATGTCGAACGAAGAGGGTAAGGGGTTTGTACGCTT
ATCCCCTGAGGTGGTGGAGTGTTTCAATCGTTTTGAATGGCCAGGAAACGTAAGGCAATTACAAAACGTATTACGCAATG
TCGTGGTTCTTAACAACGGTAAAGAAATTACACTGAGTATGCTCCCGCCTCCGCTCAATATGCCGATGGATAATCAAATC
AGAATGCAGCCAAGTGTTAAAGAACAAGCCTCGGTGCATGATATTTTCCCACTATGGCAAACGGAGAAGGCCGCAATAGA
ACAGGCCATTGAAGCCTGTGAGGGGAATATTCCTCGGGCCGCAGGTTATCTTGATGTTAGCCCATCAACTATCTATCGAA
AACTACAAGCATGGAACAATGTGAAACCGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.771

96.328

0.836
  pilR Pseudomonas aeruginosa PAK

38.137

97.408

0.371