Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   QF117_RS04850 Genome accession   NZ_CP124613
Coordinates   1081728..1082912 (+) Length   394 a.a.
NCBI ID   WP_282385039.1    Uniprot ID   -
Organism   Vibrio sp. YMD68     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1076728..1087912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF117_RS04835 (QF117_04835) ylqF 1077656..1078600 (+) 945 WP_017038156.1 ribosome biogenesis GTPase YlqF -
  QF117_RS04840 (QF117_04840) - 1078857..1079837 (-) 981 WP_282385036.1 GTP-binding protein -
  QF117_RS04845 (QF117_04845) - 1080412..1081365 (+) 954 WP_282385038.1 TDT family transporter -
  QF117_RS04850 (QF117_04850) cqsA 1081728..1082912 (+) 1185 WP_282385039.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  QF117_RS04855 (QF117_04855) cqsS 1082980..1085013 (-) 2034 WP_282385040.1 response regulator Regulator

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 43620.81 Da        Isoelectric Point: 8.1249

>NTDB_id=826755 QF117_RS04850 WP_282385039.1 1081728..1082912(+) (cqsA) [Vibrio sp. YMD68]
MNYKKSSILPEACAKKLEHDLNRLIIPADKGKNLVLGKPPSPGDVILQSNDYLNLGNHPSVIGAQISSLRSSKNNSFMSN
VFLHNDALSRKTACEMSSFTEFDHCIIAPSGWIANTALMQTICHSNSNVYIDFFTHMSLWEGARYAGANIFPFMHNNTRH
LKRLIRRNGPGIVVVDAIYSTIGTIAPLSDIIAVAKDENCATVVDESHSLGTHGPQGAGLLKHLNISADVDFMTASLAKT
FAYRAGAIWCNNRFGESLPYTAYSSIFSSAMMESELERIRATLSVIKTCDRERETLFENANILIQGLKKIGFNIRSQSQI
IAIETGDSTNTINVRNYLDKHGVLGSVFCPPATPNNKNIIRLSIHSDITKDQIEHVLSIFRQAFNQPNLYFMQP

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=826755 QF117_RS04850 WP_282385039.1 1081728..1082912(+) (cqsA) [Vibrio sp. YMD68]
ATGAATTATAAAAAATCATCAATACTGCCTGAGGCTTGCGCTAAAAAATTAGAACACGATCTCAACCGCTTGATTATTCC
TGCCGATAAAGGCAAGAACTTAGTACTGGGAAAGCCCCCTTCTCCGGGAGATGTTATTCTGCAAAGCAATGACTATTTAA
ATTTAGGTAACCACCCATCAGTTATCGGAGCCCAGATCTCATCATTACGATCAAGTAAAAATAATTCATTTATGTCGAAC
GTATTTTTACATAATGACGCACTCAGCAGAAAAACAGCTTGTGAAATGTCTAGCTTTACTGAGTTTGATCACTGCATCAT
TGCGCCATCCGGTTGGATTGCTAATACCGCCTTAATGCAAACCATTTGTCATTCCAATTCCAATGTATATATCGATTTTT
TTACTCACATGTCGTTATGGGAAGGCGCTCGATATGCTGGCGCCAACATTTTCCCGTTTATGCACAATAACACCCGCCAT
TTGAAGCGTTTAATTCGTCGAAATGGTCCTGGAATAGTAGTCGTTGACGCTATTTACAGTACGATTGGTACCATTGCACC
TTTAAGCGATATTATCGCCGTTGCAAAAGACGAGAATTGCGCGACCGTAGTTGATGAATCTCATTCATTGGGCACGCACG
GTCCGCAAGGTGCTGGACTGCTAAAGCATCTCAATATTTCTGCCGATGTTGACTTTATGACCGCAAGCCTGGCAAAAACG
TTTGCTTATCGTGCTGGCGCAATATGGTGTAACAACCGTTTTGGCGAGAGCCTACCTTATACTGCTTATTCGTCTATTTT
TAGTTCAGCGATGATGGAAAGTGAATTAGAAAGAATCAGAGCGACTCTTTCAGTAATAAAAACATGTGACCGGGAAAGAG
AAACGTTATTTGAGAATGCAAATATCCTGATTCAAGGATTGAAAAAAATTGGCTTTAACATACGCAGCCAGTCTCAAATA
ATAGCGATTGAAACGGGTGATTCCACTAACACGATAAATGTCAGAAATTATCTTGATAAGCATGGCGTATTAGGATCGGT
ATTCTGCCCCCCCGCGACCCCTAATAATAAGAACATCATTCGTCTTTCGATACACTCTGACATTACGAAAGACCAGATAG
AACACGTTCTCTCTATTTTTCGCCAAGCTTTTAATCAGCCTAACCTGTATTTCATGCAACCGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

52.742

97.208

0.513