Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | QJQ47_RS26940 | Genome accession | NZ_CP124612 |
| Coordinates | 5681051..5681923 (+) | Length | 290 a.a. |
| NCBI ID | WP_034040535.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain NY3649 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5676051..5686923
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QJQ47_RS26915 (QJQ47_26920) | nadC | 5676392..5677240 (+) | 849 | WP_003116246.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| QJQ47_RS26925 (QJQ47_26930) | pilA | 5677442..5677891 (-) | 450 | WP_003112842.1 | type 4a pilus biogenesis protein PilA | Machinery gene |
| QJQ47_RS26930 (QJQ47_26935) | pilB | 5678123..5679823 (+) | 1701 | WP_003112841.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| QJQ47_RS26935 (QJQ47_26940) | pilC | 5679827..5681047 (+) | 1221 | WP_003112840.1 | type 4a pilus biogenesis protein PilC | Machinery gene |
| QJQ47_RS26940 (QJQ47_26945) | pilD | 5681051..5681923 (+) | 873 | WP_034040535.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| QJQ47_RS26945 (QJQ47_26950) | coaE | 5681920..5682531 (+) | 612 | WP_034040533.1 | dephospho-CoA kinase | - |
| QJQ47_RS26950 (QJQ47_26955) | yacG | 5682528..5682728 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| QJQ47_RS26955 (QJQ47_26960) | - | 5682765..5682974 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| QJQ47_RS26960 (QJQ47_26965) | - | 5683080..5683769 (-) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| QJQ47_RS26965 (QJQ47_26970) | - | 5683766..5684236 (-) | 471 | WP_034040530.1 | hypothetical protein | - |
| QJQ47_RS26970 (QJQ47_26975) | - | 5684233..5684658 (-) | 426 | WP_009875877.1 | GNAT family N-acetyltransferase | - |
| QJQ47_RS26975 (QJQ47_26980) | - | 5684791..5685420 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| QJQ47_RS26980 (QJQ47_26985) | - | 5685417..5685866 (+) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| QJQ47_RS26985 (QJQ47_26990) | - | 5685892..5686062 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31756.82 Da Isoelectric Point: 7.6612
>NTDB_id=826742 QJQ47_RS26940 WP_034040535.1 5681051..5681923(+) (pilD) [Pseudomonas aeruginosa strain NY3649]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTCQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTCQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=826742 QJQ47_RS26940 WP_034040535.1 5681051..5681923(+) (pilD) [Pseudomonas aeruginosa strain NY3649]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGTCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGTCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.714 |
96.552 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
53.004 |
97.586 |
0.517 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.921 |
95.862 |
0.469 |