Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   SHN03_RS08360 Genome accession   NZ_CP138566
Coordinates   1743865..1745127 (-) Length   420 a.a.
NCBI ID   WP_031874965.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AUSMDU00020487     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1738865..1750127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHN03_RS08335 - 1739063..1739731 (-) 669 WP_000805952.1 uroporphyrinogen-III synthase -
  SHN03_RS08340 hemC 1739753..1740679 (-) 927 WP_001230218.1 hydroxymethylbilane synthase -
  SHN03_RS08345 ccsA 1740721..1741536 (-) 816 WP_001157329.1 cytochrome c biogenesis protein -
  SHN03_RS08350 hemA 1741558..1742904 (-) 1347 WP_000545463.1 glutamyl-tRNA reductase -
  SHN03_RS08355 yihA 1743121..1743711 (-) 591 WP_000867697.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  SHN03_RS08360 clpX 1743865..1745127 (-) 1263 WP_031874965.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  SHN03_RS08365 tig 1745278..1746579 (-) 1302 WP_000127576.1 trigger factor -
  SHN03_RS08370 - 1746627..1746737 (-) 111 WP_001790560.1 hypothetical protein -
  SHN03_RS08375 - 1746742..1747671 (-) 930 WP_001280012.1 hypothetical protein -
  SHN03_RS08380 - 1747690..1748298 (-) 609 WP_000032657.1 NUDIX domain-containing protein -
  SHN03_RS08385 rplT 1748440..1748796 (-) 357 WP_001138360.1 50S ribosomal protein L20 -
  SHN03_RS08390 rpmI 1748843..1749043 (-) 201 WP_001125540.1 50S ribosomal protein L35 -
  SHN03_RS08395 infC 1749072..1749599 (-) 528 WP_001807711.1 translation initiation factor IF-3 -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46283.43 Da        Isoelectric Point: 4.2645

>NTDB_id=826656 SHN03_RS08360 WP_031874965.1 1743865..1745127(-) (clpX) [Staphylococcus aureus strain AUSMDU00020487]
MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEAITELTTPKEIMDHLNEYVIGQEK
AKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENIL
LRLIQAADFDIDKAEKGIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQIDTTN
ILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNIL
TQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKAIERKTGARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTINEE
TEPELYDAEGNLINNSKTSA

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=826656 SHN03_RS08360 WP_031874965.1 1743865..1745127(-) (clpX) [Staphylococcus aureus strain AUSMDU00020487]
ATGTTTAAATTCAATGAAGATGAAGAAAATTTGAAATGCTCTTTCTGCGGAAAAGACCAAGATCAAGTAAAAAAACTTGT
AGCAGGAAGTGGTGTATATATTTGTAATGAGTGTATTGAATTATGCTCAGAAATCGTCGAAGAAGAATTAGCTCAAAACA
CTTCTGAAGCGATTACAGAATTAACTACTCCTAAAGAAATTATGGATCATTTAAACGAATATGTTATTGGTCAAGAAAAA
GCTAAAAAATCTTTAGCTGTGGCTGTTTATAACCACTATAAGCGTATTCAACAATTAGGACCAAAAGAAGATGATGTTGA
ATTACAAAAAAGTAACATTGCCTTAATTGGGCCAACAGGTAGTGGTAAAACATTATTAGCTCAAACATTAGCCAAGACGT
TGAATGTACCATTTGCAATTGCAGATGCGACAAGTTTAACTGAAGCTGGTTATGTAGGCGATGATGTTGAAAATATCTTG
TTGAGATTAATTCAAGCAGCTGACTTTGACATTGATAAAGCCGAAAAAGGTATTATTTATGTAGATGAAATTGATAAAAT
TGCACGTAAATCTGAAAACACATCTATAACACGTGACGTTTCAGGTGAAGGTGTTCAACAAGCATTGCTTAAAATCTTAG
AAGGTACAACTGCAAGTGTTCCACCACAAGGTGGACGCAAACATCCAAACCAAGAAATGATTCAAATTGATACAACAAAT
ATCTTATTTATTCTTGGTGGTGCCTTTGATGGTATTGAAGAAGTGATTAAGCGCCGCCTTGGTGAAAAAGTTATTGGTTT
CTCAAGCAATGAAGCTGATAAATATGATGAACAAGCATTATTAGCACAAATTCGCCCAGAAGATTTGCAAGCCTATGGTT
TGATTCCTGAATTTATCGGACGTGTGCCAATTGTAGCTAATTTAGAAACATTAGATGTAACTGCGTTGAAAAACATCTTA
ACTCAACCTAAAAATGCACTTGTGAAACAATATACTAAAATGCTGGAATTAGATGATGTGGATTTAGAGTTCACTGAAGA
AGCTTTATCAGCAATTAGTGAAAAAGCAATTGAAAGAAAAACAGGTGCGCGTGGTTTACGTTCAATCATAGAAGAATCGT
TAATCGATATTATGTTTGATGTGCCTTCTAACGAAAATGTAACGAAGGTAGTTATTACAGCACAAACAATTAATGAAGAA
ACTGAACCAGAACTATACGACGCAGAAGGTAATTTAATTAATAATAGTAAAACATCAGCTTAA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(109-305)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

66.667

95

0.633
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.456

94.048

0.531