Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QI003_RS21200 Genome accession   NZ_CP124601
Coordinates   4203619..4204308 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus stercoris strain BS21     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 4198619..4209308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI003_RS21165 (QI003_21165) flgN 4198798..4199280 (-) 483 WP_282373672.1 flagellar protein FlgN -
  QI003_RS21170 (QI003_21170) flgM 4199295..4199561 (-) 267 WP_014665557.1 flagellar biosynthesis anti-sigma factor FlgM -
  QI003_RS21175 (QI003_21175) - 4199642..4200061 (-) 420 WP_014665558.1 TIGR03826 family flagellar region protein -
  QI003_RS21180 (QI003_21180) comFC 4200135..4200857 (-) 723 WP_282373674.1 ComF family protein Machinery gene
  QI003_RS21185 (QI003_21185) comFB 4200821..4201117 (-) 297 WP_014665560.1 late competence protein ComFB -
  QI003_RS21190 (QI003_21190) comFA 4201190..4202569 (-) 1380 WP_282373676.1 ATP-dependent helicase ComFA Machinery gene
  QI003_RS21195 (QI003_21195) - 4202676..4203521 (-) 846 WP_282373678.1 DegV family protein -
  QI003_RS21200 (QI003_21200) degU 4203619..4204308 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QI003_RS21205 (QI003_21205) degS 4204391..4205548 (-) 1158 WP_014665563.1 two-component sensor histidine kinase DegS Regulator
  QI003_RS21210 (QI003_21210) - 4205765..4206418 (+) 654 WP_282373679.1 YigZ family protein -
  QI003_RS21215 (QI003_21215) tagV 4206418..4207593 (+) 1176 WP_040081662.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  QI003_RS21220 (QI003_21220) - 4207665..4208741 (-) 1077 WP_014665566.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=826653 QI003_RS21200 WP_003219701.1 4203619..4204308(-) (degU) [Bacillus stercoris strain BS21]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=826653 QI003_RS21200 WP_003219701.1 4203619..4204308(-) (degU) [Bacillus stercoris strain BS21]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTTGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCTAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGCGGCTCTTACCTTCATCCGAAGGTTACGCATA
ACCTCGTTAACGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCTGCACATCCTCAACACGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTCTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTGAGCAATATTTTACAAAAAATGAATGTGAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1