Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QI003_RS21180 Genome accession   NZ_CP124601
Coordinates   4200135..4200857 (-) Length   240 a.a.
NCBI ID   WP_282373674.1    Uniprot ID   -
Organism   Bacillus stercoris strain BS21     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4195135..4205857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI003_RS21145 (QI003_21145) fliW 4195273..4195704 (-) 432 WP_071582053.1 flagellar assembly protein FliW -
  QI003_RS21150 (QI003_21150) - 4195725..4196300 (-) 576 WP_014665553.1 DUF6470 family protein -
  QI003_RS21155 (QI003_21155) flgL 4196349..4197245 (-) 897 WP_040081667.1 flagellar hook-associated protein FlgL -
  QI003_RS21160 (QI003_21160) flgK 4197256..4198779 (-) 1524 WP_282373670.1 flagellar hook-associated protein FlgK -
  QI003_RS21165 (QI003_21165) flgN 4198798..4199280 (-) 483 WP_282373672.1 flagellar protein FlgN -
  QI003_RS21170 (QI003_21170) flgM 4199295..4199561 (-) 267 WP_014665557.1 flagellar biosynthesis anti-sigma factor FlgM -
  QI003_RS21175 (QI003_21175) - 4199642..4200061 (-) 420 WP_014665558.1 TIGR03826 family flagellar region protein -
  QI003_RS21180 (QI003_21180) comFC 4200135..4200857 (-) 723 WP_282373674.1 ComF family protein Machinery gene
  QI003_RS21185 (QI003_21185) comFB 4200821..4201117 (-) 297 WP_014665560.1 late competence protein ComFB -
  QI003_RS21190 (QI003_21190) comFA 4201190..4202569 (-) 1380 WP_282373676.1 ATP-dependent helicase ComFA Machinery gene
  QI003_RS21195 (QI003_21195) - 4202676..4203521 (-) 846 WP_282373678.1 DegV family protein -
  QI003_RS21200 (QI003_21200) degU 4203619..4204308 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QI003_RS21205 (QI003_21205) degS 4204391..4205548 (-) 1158 WP_014665563.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27283.72 Da        Isoelectric Point: 10.0037

>NTDB_id=826651 QI003_RS21180 WP_282373674.1 4200135..4200857(-) (comFC) [Bacillus stercoris strain BS21]
MPNKAGGGIHKLICLLCDSQFSQAVTWRALFLLKPDEKVCHSCRSKLKKITGHICTICGRPQSVYAVCRDCEAWKSRISH
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQSQLLAECL
GRPIHHPLIRLNNEKQSKKKKTERLLSARIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVASFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=826651 QI003_RS21180 WP_282373674.1 4200135..4200857(-) (comFC) [Bacillus stercoris strain BS21]
ATGCCAAACAAAGCAGGAGGAGGCATTCATAAACTGATCTGTCTGCTATGCGATTCGCAATTTTCTCAAGCTGTTACATG
GAGAGCTCTTTTTTTATTAAAGCCTGACGAAAAGGTCTGTCATTCCTGCAGAAGTAAATTAAAAAAAATCACAGGACATA
TCTGCACCATATGCGGCAGACCTCAATCCGTTTATGCGGTATGCAGGGATTGTGAGGCGTGGAAATCAAGGATCAGTCAC
AGCTTGCTGCTCCGCCAAAATCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATTATAAATGCTTTTAAAAGCGATTTTTCTTCAACCTTTTCAAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTTCCTATTCCGCTAAGCAAGGAACGGGAAGAGGAGCGCGGATTTAATCAGTCACAGCTCCTGGCAGAATGTTTA
GGCAGGCCCATCCACCATCCCCTCATCCGCCTGAATAATGAGAAACAGTCTAAGAAAAAGAAAACAGAACGCCTGCTTTC
CGCGCGTATTTTTGATACGAAAAACAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACTTTGCATTTTGCAGCGCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGGCATCTTTTACCTTAATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

92.083

100

0.921