Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QI003_RS15505 Genome accession   NZ_CP124601
Coordinates   3115950..3117680 (-) Length   576 a.a.
NCBI ID   WP_134975350.1    Uniprot ID   -
Organism   Bacillus stercoris strain BS21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3110950..3122680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI003_RS15475 (QI003_15475) - 3110954..3111250 (-) 297 WP_282372638.1 hypothetical protein -
  QI003_RS15480 (QI003_15480) - 3111554..3111688 (+) 135 WP_014664551.1 hypothetical protein -
  QI003_RS15485 (QI003_15485) - 3111761..3112879 (+) 1119 WP_041521374.1 NADH-dependent flavin oxidoreductase -
  QI003_RS15490 (QI003_15490) - 3113095..3113274 (-) 180 WP_014664554.1 hypothetical protein -
  QI003_RS15495 (QI003_15495) spo0A 3113417..3114220 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  QI003_RS15500 (QI003_15500) spoIVB 3114496..3115776 (-) 1281 WP_014664555.1 SpoIVB peptidase -
  QI003_RS15505 (QI003_15505) recN 3115950..3117680 (-) 1731 WP_134975350.1 DNA repair protein RecN Machinery gene
  QI003_RS15510 (QI003_15510) argR 3117717..3118166 (-) 450 WP_003230265.1 arginine repressor ArgR -
  QI003_RS15515 (QI003_15515) - 3118263..3119108 (-) 846 WP_040082669.1 TlyA family RNA methyltransferase -
  QI003_RS15520 (QI003_15520) dxs 3119105..3121006 (-) 1902 WP_148343644.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QI003_RS15525 (QI003_15525) - 3121182..3122072 (-) 891 WP_071578614.1 polyprenyl synthetase family protein -
  QI003_RS15530 (QI003_15530) - 3122062..3122316 (-) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64577.36 Da        Isoelectric Point: 4.7370

>NTDB_id=826623 QI003_RS15505 WP_134975350.1 3115950..3117680(-) (recN) [Bacillus stercoris strain BS21]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVLGVC
AEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALQ
AYQEGYQRYTKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLEINEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QSGLDWVGMASAQLEDISDINEPLKKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNYIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAANVSQIRKTWAKKLADEIHRELKSLYMEKSTFDTEFKI
RQASRNEEAPVVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKIVEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=826623 QI003_RS15505 WP_134975350.1 3115950..3117680(-) (recN) [Bacillus stercoris strain BS21]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATTATAGATGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTTAGATATGGGGAAGCGAAAGCAGAACTTGAAGGGCTGTTTCTTTTGGAGAGCGGCCATCCCGTTTTAGGCGTATGC
GCTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTCATGAGAAGAGATATCAGCACGAGCGGAAAAAGCGTTTGCCG
TGTCAATGGCAAGCTTGTCACGATTGCCTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAAGACGAAAATCATCTCCAGCTCTTGGACAAGTTTGCCGGAGCCGAAGTGGAAAGCGCGCTACAA
GCGTATCAGGAAGGGTACCAGCGGTATACGAAGCTGCTCAAAAAGCTAAAACAGCTTTCTGAAAGCGAACAGGAAATGGC
CCATCGCCTTGATCTCATTCAATTTCAGCTCGAAGAAATCGAATCAGCAAAGCTTGAGATCAACGAAGATGAACAGCTTC
AAGAAGAGCGTCAGCAAATTTCAAACTTTGAGAAGATATATGAATCGCTGCAAAATGCATATAATGCGCTTCGCAGTGAA
CAGAGCGGATTGGACTGGGTCGGAATGGCATCAGCCCAGCTTGAAGATATATCTGATATTAACGAACCGCTGAAAAAACT
GTCTGAGAGTGTTTCGAACTCCTACTATCTGCTTGAGGACGCTACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
ATGATCCGGAACGCCTGAACTATATTGAGACGCGGCTCAATGAAATCAAACAGCTGAAACGAAAATACGGTGCCACTGTC
GAGGACATTTTGGAATATGCTTCTAAAATTGAAGAAGAAATTGACCAAATTGAAAACAGGGACAGCCACCTCCAAAGCCT
GAAAAAGGAGCTTGACTCCGTTGGCAAGGATGTCGCAGTGGAAGCGGCAAATGTTTCTCAAATCCGGAAAACATGGGCGA
AAAAACTGGCTGATGAGATTCATCGGGAATTAAAAAGCCTGTACATGGAAAAATCAACGTTTGATACGGAATTCAAAATC
AGACAAGCGTCACGCAATGAAGAGGCACCGGTTGTAAACGGCCAGCCTGTTCAGCTGACTGAACAAGGGATCGATCTGGT
GAAGTTTTTAATTTCAACCAATACAGGCGAGCCGCTGAAATCTCTTTCGAAAGTCGCTTCAGGTGGAGAGCTGTCACGGG
TGATGCTTGCCATAAAAAGCATTTTTTCCTCACAGCAGGATGTGACATCGATCATTTTTGATGAGGTTGATACCGGTGTA
AGCGGCAGGGTCGCACAGGCAATCGCTGAGAAGATCCATAAAGTGTCAATAGGATCACAAGTGCTTTGTATTACACACTT
GCCTCAGGTGGCTGCCATGGCCGATACGCATCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACGACGACACGTGTCA
AGCCGCTTTCTAAGCAGGAAAAAATAGTGGAAATCGGACGCATGATTGCAGGTGTCGAGGTAACCGATTTAACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979