Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   QI003_RS15495 Genome accession   NZ_CP124601
Coordinates   3113417..3114220 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus stercoris strain BS21     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3108417..3119220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI003_RS15465 (QI003_15465) - 3109505..3110236 (-) 732 WP_103032325.1 glycerophosphodiester phosphodiesterase -
  QI003_RS15470 (QI003_15470) - 3110314..3110934 (-) 621 WP_083252872.1 N-acetylmuramoyl-L-alanine amidase -
  QI003_RS15475 (QI003_15475) - 3110954..3111250 (-) 297 WP_282372638.1 hypothetical protein -
  QI003_RS15480 (QI003_15480) - 3111554..3111688 (+) 135 WP_014664551.1 hypothetical protein -
  QI003_RS15485 (QI003_15485) - 3111761..3112879 (+) 1119 WP_041521374.1 NADH-dependent flavin oxidoreductase -
  QI003_RS15490 (QI003_15490) - 3113095..3113274 (-) 180 WP_014664554.1 hypothetical protein -
  QI003_RS15495 (QI003_15495) spo0A 3113417..3114220 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  QI003_RS15500 (QI003_15500) spoIVB 3114496..3115776 (-) 1281 WP_014664555.1 SpoIVB peptidase -
  QI003_RS15505 (QI003_15505) recN 3115950..3117680 (-) 1731 WP_134975350.1 DNA repair protein RecN Machinery gene
  QI003_RS15510 (QI003_15510) argR 3117717..3118166 (-) 450 WP_003230265.1 arginine repressor ArgR -
  QI003_RS15515 (QI003_15515) - 3118263..3119108 (-) 846 WP_040082669.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=826622 QI003_RS15495 WP_003226427.1 3113417..3114220(-) (spo0A) [Bacillus stercoris strain BS21]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=826622 QI003_RS15495 WP_003226427.1 3113417..3114220(-) (spo0A) [Bacillus stercoris strain BS21]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTGAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGTTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATCATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTTGGTCATATCCGCCAAGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGCATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGTGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGCTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAACTCAGAGTTCATTGCGATGGTTGCGGATAAGCTTAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1