Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QI003_RS12080 Genome accession   NZ_CP124601
Coordinates   2403514..2404407 (+) Length   297 a.a.
NCBI ID   WP_103032057.1    Uniprot ID   -
Organism   Bacillus stercoris strain BS21     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2398514..2409407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI003_RS12060 (QI003_12060) - 2399186..2400913 (+) 1728 WP_282372001.1 hypothetical protein -
  QI003_RS12065 (QI003_12065) - 2400910..2401191 (+) 282 WP_014663956.1 FlhB-like flagellar biosynthesis protein -
  QI003_RS12070 (QI003_12070) sucC 2401366..2402523 (+) 1158 WP_014663957.1 ADP-forming succinate--CoA ligase subunit beta -
  QI003_RS12075 (QI003_12075) sucD 2402552..2403454 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  QI003_RS12080 (QI003_12080) dprA 2403514..2404407 (+) 894 WP_103032057.1 DNA-processing protein DprA Machinery gene
  QI003_RS12085 (QI003_12085) topA 2404595..2406670 (+) 2076 WP_282372007.1 type I DNA topoisomerase -
  QI003_RS12090 (QI003_12090) trmFO 2406746..2408053 (+) 1308 WP_069149591.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QI003_RS12095 (QI003_12095) xerC 2408121..2409035 (+) 915 WP_014663961.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 33017.34 Da        Isoelectric Point: 9.9461

>NTDB_id=826616 QI003_RS12080 WP_103032057.1 2403514..2404407(+) (dprA) [Bacillus stercoris strain BS21]
MDQAAACLTTCRINQLLSPSLLLKWWKADPSMSLTSSVLQTVTRDKMKAAALKKKIEEFYPKLQRVLAAYREQGINTIPI
SSKQYPFWLKTIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTEELCRKDWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADYMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIRSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=826616 QI003_RS12080 WP_103032057.1 2403514..2404407(+) (dprA) [Bacillus stercoris strain BS21]
TTGGATCAGGCCGCTGCCTGCTTAACGACTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCATCGGTGTTACAAACGGTTACTCGTGATAAAATGAAAGCAGCTGCATTAAAAA
AGAAAATAGAAGAATTTTACCCAAAGCTCCAACGCGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATTCCTATC
TCTTCAAAGCAATATCCTTTCTGGCTTAAAACCATTTATGATCCCCCCGCCGTTCTGTTTGCAAAGGGTGATATGACTCT
TCTTTCGAAAGGAAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTACGGGAAACAAGTTGTCAATCATCTTA
CAGAAGAGCTCTGCCGTAAAGATTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGGGAAAACCTTCAATTAGC
AGATTACATGGCTAAACACCATATCCTTCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATCATCAGCGGACTGAGTGAAGGTGTTATTGTCGTACAGGGCAAGGAAAAAAGCGGTTCGCTGATAACTGCC
TATCAAGCATTGGAGCAAGGTAGAGAAGTGTTTGCCGTACCCGGTTCATTATTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATAAGGTCAGCAGAGGATATTTTCGAGGAGCTTCCCGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

94.949

100

0.949
  dprA Lactococcus lactis subsp. cremoris KW2

39.855

92.929

0.37
  dprA Legionella pneumophila strain ERS1305867

38.214

94.276

0.36