Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QI003_RS01955 Genome accession   NZ_CP124601
Coordinates   369435..369884 (-) Length   149 a.a.
NCBI ID   WP_134976099.1    Uniprot ID   -
Organism   Bacillus stercoris strain BS21     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 364435..374884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI003_RS01920 (QI003_01920) - 364590..365270 (-) 681 WP_134976095.1 amino acid ABC transporter permease -
  QI003_RS01925 (QI003_01925) - 365280..366143 (-) 864 WP_014662728.1 transporter substrate-binding domain-containing protein -
  QI003_RS01930 (QI003_01930) - 366305..366500 (+) 196 Protein_336 hypothetical protein -
  QI003_RS01935 (QI003_01935) - 366518..366973 (+) 456 WP_040084209.1 RDD family protein -
  QI003_RS01940 (QI003_01940) - 367054..367386 (+) 333 WP_040084394.1 YckD family protein -
  QI003_RS01945 (QI003_01945) bglC 367540..368973 (+) 1434 WP_069148927.1 6-phospho-beta-glucosidase -
  QI003_RS01950 (QI003_01950) nin/comJ 369010..369408 (-) 399 WP_014662735.1 DNA-entry nuclease inhibitor Regulator
  QI003_RS01955 (QI003_01955) nucA/comI 369435..369884 (-) 450 WP_134976099.1 DNA-entry nuclease Machinery gene
  QI003_RS01960 (QI003_01960) tlpC 370052..371773 (-) 1722 WP_282373953.1 methyl-accepting chemotaxis protein TlpC -
  QI003_RS01965 (QI003_01965) hxlB 371884..372441 (-) 558 WP_014662738.1 6-phospho-3-hexuloisomerase -
  QI003_RS01970 (QI003_01970) hxlA 372447..373079 (-) 633 WP_095431239.1 3-hexulose-6-phosphate synthase -
  QI003_RS01975 (QI003_01975) - 373312..373674 (+) 363 WP_134976103.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16374.33 Da        Isoelectric Point: 4.5022

>NTDB_id=826584 QI003_RS01955 WP_134976099.1 369435..369884(-) (nucA/comI) [Bacillus stercoris strain BS21]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETIALPSDRYPETAKHIKNAINEGHSDVCTIDRDGA
EERREQSLKDVPPKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=826584 QI003_RS01955 WP_134976099.1 369435..369884(-) (nucA/comI) [Bacillus stercoris strain BS21]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCCTCCCTTCTGACCGTT
ATCCCGAAACGGCCAAACATATTAAGAATGCGATAAATGAGGGGCACTCAGATGTGTGCACCATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAAGACGTACCGCCAAAAACGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAATCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTATCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

95.302

100

0.953