Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QI003_RS00580 Genome accession   NZ_CP124601
Coordinates   105956..107332 (+) Length   458 a.a.
NCBI ID   WP_015252992.1    Uniprot ID   A0A0C3LIP7
Organism   Bacillus stercoris strain BS21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 100956..112332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI003_RS00560 (QI003_00560) ctsR 101309..101773 (+) 465 WP_014662512.1 transcriptional regulator CtsR -
  QI003_RS00565 (QI003_00565) mcsA 101787..102344 (+) 558 WP_041521234.1 protein-arginine kinase activator protein McsA -
  QI003_RS00570 (QI003_00570) - 102344..103435 (+) 1092 WP_069148826.1 protein arginine kinase -
  QI003_RS00575 (QI003_00575) clpC 103432..105864 (+) 2433 WP_282373901.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  QI003_RS00580 (QI003_00580) radA 105956..107332 (+) 1377 WP_015252992.1 DNA repair protein RadA Machinery gene
  QI003_RS00585 (QI003_00585) disA 107336..108418 (+) 1083 WP_014662516.1 DNA integrity scanning diadenylate cyclase DisA -
  QI003_RS00590 (QI003_00590) - 108534..109634 (+) 1101 WP_282373902.1 PIN/TRAM domain-containing protein -
  QI003_RS00595 (QI003_00595) ispD 109649..110347 (+) 699 WP_134976549.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QI003_RS00600 (QI003_00600) ispF 110340..110816 (+) 477 WP_014475594.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49438.94 Da        Isoelectric Point: 8.2399

>NTDB_id=826581 QI003_RS00580 WP_015252992.1 105956..107332(+) (radA) [Bacillus stercoris strain BS21]
MAKTKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPITSIETSEEPRVKTQLGEF
NRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSGSSNSVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYIS
SAIQEMNPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGSAGSSITASMEGTRPILVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAISIASSFRDTPPNPADCFIGEVGLT
GEVRRVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKPKGIEVIGVANVAEALRTSLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=826581 QI003_RS00580 WP_015252992.1 105956..107332(+) (radA) [Bacillus stercoris strain BS21]
ATGGCTAAAACAAAATCGAAATTCATCTGCCAATCCTGCGGCTACGAGTCTCCAAAATGGATGGGGAAATGTCCGGGCTG
CGGTGCTTGGAATACAATGGTTGAAGAAATGATTAAAAAAGCACCGGCCAATCGGAGAGCGGCTTTTTCTCATTCTGTTC
AAACTGTACAGAAACCTTCACCTATTACATCAATCGAAACATCAGAAGAACCCCGCGTTAAAACCCAGCTTGGCGAGTTT
AACAGAGTACTCGGCGGAGGTGTCGTTAAAGGCTCCCTCGTTTTAATCGGCGGTGATCCTGGTATCGGAAAGTCAACGTT
ATTACTGCAGGTTTCCGCTCAATTATCAGGCTCATCAAACAGTGTTCTGTATATTTCGGGAGAAGAATCTGTAAAGCAAA
CGAAGCTTCGAGCTGACCGCCTCGGCATCAATAATCCGTCACTGCATGTTTTATCTGAAACCGATATGGAGTATATTTCG
TCTGCTATACAAGAGATGAATCCAGCGTTTGTCGTTGTTGACTCTATTCAAACGGTATACCAAAGCGATATCACATCGGC
ACCGGGCAGCGTTTCACAGGTCAGAGAATGTACCGCTGAGCTAATGAAAATTGCAAAAACAAAAGGTATCCCGATTTTTA
TCGTGGGACACGTGACGAAAGAAGGGTCTATTGCAGGGCCGAGACTGTTGGAGCATATGGTTGACACTGTTTTATATTTT
GAAGGAGAACGCCACCATACTTTCCGCATTTTGCGGGCTGTAAAAAACCGTTTCGGATCTACAAACGAAATGGGCATATT
TGAAATGCGGGAAGAGGGGCTCACTGAGGTTTTGAATCCTTCAGAAATTTTCTTAGAGGAACGCTCTGCGGGTTCCGCGG
GCTCGAGTATCACTGCTTCTATGGAGGGCACTAGACCGATTCTCGTTGAAATTCAGGCGCTCATCTCGCCAACAAGCTTT
GGAAACCCAAGGCGTATGGCAACGGGAATAGACCACAACAGGGTTTCTCTGTTAATGGCTGTATTAGAAAAAAGAGTGGG
GCTGCTGCTGCAAAATCAGGATGCTTATTTGAAAGTGGCTGGCGGCGTTAAGCTTGATGAACCGGCAATTGATCTTGCCA
TTGCGATCAGTATCGCATCAAGCTTTAGAGACACACCTCCAAATCCTGCAGATTGTTTTATTGGAGAAGTGGGATTAACC
GGAGAAGTGCGACGGGTTTCAAGAATTGAACAGCGTGTGAAAGAAGCGGCAAAGCTTGGTTTTAAACGCATGATCATACC
CGCGGCTAATCTGGATGGATGGACAAAACCAAAAGGGATTGAGGTTATCGGAGTAGCAAATGTTGCAGAGGCGCTTCGTA
CTTCATTAGGAGGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-222)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C3LIP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996
  radA Streptococcus mitis NCTC 12261

63.355

98.908

0.627
  radA Streptococcus pneumoniae Rx1

63.355

98.908

0.627
  radA Streptococcus pneumoniae D39

63.355

98.908

0.627
  radA Streptococcus pneumoniae R6

63.355

98.908

0.627
  radA Streptococcus pneumoniae TIGR4

63.355

98.908

0.627
  radA Streptococcus mitis SK321

63.135

98.908

0.624