Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   R8507_RS02410 Genome accession   NZ_AP026925
Coordinates   465831..466880 (+) Length   349 a.a.
NCBI ID   WP_000653752.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700097     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 460831..471880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8507_RS02380 (PC0094_04680) - 461815..462183 (+) 369 WP_044791649.1 hypothetical protein -
  R8507_RS02385 (PC0094_04690) dnaJ 462456..463592 (+) 1137 WP_001066301.1 molecular chaperone DnaJ -
  R8507_RS02390 (PC0094_04700) - 463927..464166 (-) 240 WP_001813906.1 hypothetical protein -
  R8507_RS02395 (PC0094_04710) - 464328..464615 (-) 288 WP_000777760.1 hypothetical protein -
  R8507_RS02400 (PC0094_04720) - 464625..465035 (-) 411 WP_001278301.1 HIT family protein -
  R8507_RS02405 (PC0094_04730) pptA 465103..465834 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  R8507_RS02410 (PC0094_04740) pptB 465831..466880 (+) 1050 WP_000653752.1 ABC transporter permease Regulator
  R8507_RS02415 (PC0094_04750) - 467048..467377 (-) 330 WP_000132575.1 hypothetical protein -
  R8507_RS02420 (PC0094_04760) - 467653..467991 (+) 339 WP_000682122.1 LytTR family DNA-binding domain-containing protein -
  R8507_RS02425 (PC0094_04770) comE/blpR 467996..468733 (+) 738 WP_001219126.1 response regulator transcription factor Regulator
  R8507_RS02430 (PC0094_04780) - 468746..470086 (+) 1341 WP_317643596.1 sensor histidine kinase -
  R8507_RS02435 (PC0094_04790) blpC 470157..470285 (-) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -
  R8507_RS02440 (PC0094_04800) - 470342..471703 (-) 1362 WP_001069060.1 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40652.84 Da        Isoelectric Point: 9.9405

>NTDB_id=82653 R8507_RS02410 WP_000653752.1 465831..466880(+) (pptB) [Streptococcus pneumoniae strain PZ900700097]
MKDLFLKRKQAFRKECLCYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWIFVQTLFLLLFAPLFLVMGYGLPVFLVYVLLLGVGKYFLFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKVVQKVSGKIWQNLYLRSYLRNGDLFALSLRLLLLS
LLAQVFIEQSWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLISFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=82653 R8507_RS02410 WP_000653752.1 465831..466880(+) (pptB) [Streptococcus pneumoniae strain PZ900700097]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTTGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACCGGCATTTCCCTAGTCTT
TTGGATTTTTGTTCAGACCCTCTTCTTGCTGTTATTTGCGCCCTTGTTTTTAGTCATGGGTTATGGCTTGCCTGTTTTTC
TGGTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCTCTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGATTGGGACTATGTCATTTCCCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTCAAGCGTCGTGCCTATCTGGACTTTATTCTAAAGGTTGTTCAGAAGGTGTCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATTTGCGAAATGGAGACCTTTTTGCCCTTAGTCTCCGTCTGCTCTTGCTTTCT
TTGCTGGCGCAGGTCTTTATCGAGCAATCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTTTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGATCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.429

100

0.476

  pptB Streptococcus thermophilus LMD-9

46.571

100

0.467


Multiple sequence alignment