Detailed information NTG0826402

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: QIF44_RS18605
• Genome accession: NZ_CP124546
• Coordinates: 4104175..4105548 (+)
• Length: 457 a.a.
• NCBI ID: WP_282279939.1
• Uniprot ID: -
• Organism: Stenotrophomonas indicatrix strain MGMM10
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4099175..4110548

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QIF44_RS18590 (QIF44_18590)	sucD	4100064..4100939 (-)	876	WP_017356169.1	succinate--CoA ligase subunit alpha	-
QIF44_RS18595 (QIF44_18595)	sucC	4100961..4102130 (-)	1170	WP_025874298.1	ADP-forming succinate--CoA ligase subunit beta	-
QIF44_RS18600 (QIF44_18600)	-	4102507..4104120 (+)	1614	WP_282279938.1	ATP-binding protein	-
QIF44_RS18605 (QIF44_18605)	pilR	4104175..4105548 (+)	1374	WP_282279939.1	sigma-54 dependent transcriptional regulator	Regulator
QIF44_RS18610 (QIF44_18610)	pilB	4106063..4107790 (-)	1728	WP_032975168.1	type IV-A pilus assembly ATPase PilB	Machinery gene

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49669.96 Da
• Isoelectric Point: 6.6449

>NTDB_id=826402 QIF44_RS18605 WP_282279939.1 4104175..4105548(+) (pilR) [Stenotrophomonas indicatrix strain MGMM10]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDITVLRGLVKHALELNNSERPVAGPAAEQAARLLGESPAMDVLRATIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPTELMESEFFGHRKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAPSEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELRVPPLRERRQDLPA
LAASILARLARSHGRATPLLAPSALDALAQYGFPGNVRELENILERALALAEEDRIGADDLRLPQHAQRSPGSAAHAEAV
VDLHPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=826402 QIF44_RS18605 WP_282279939.1 4104175..4105548(+) (pilR) [Stenotrophomonas indicatrix strain MGMM10]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGATGAACGCGATATCCGCGAACTGCTGGTGTTGACCCTCGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCCAGCAATCCCTATGACCTGTGCATCA
CCGACATGCGCTTGCCCGACGGCAATGGCATCGAACTGGTCAGCGAGATCGCCCAGCACTATCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
GGACATCACCGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACAGCGAACGCCCCGTTGCCGGCCCCGCCG
CCGAACAGGCCGCACGCCTGCTCGGCGAATCGCCGGCGATGGACGTGCTGCGCGCCACCATCGGCAAGGTTGCGCGCAGC
CAGGCGCCGGTCTACATCCTGGGCGAATCCGGGGTGGGCAAGGAACTGGTTGCACGCACCATCCATGCACAGGGTGCACG
CGCCGCTGGGCCGTTCGTGCCGGTCAACTGTGGCGCCATTCCCACCGAGTTGATGGAGAGCGAGTTCTTCGGCCATCGCA
AGGGCAGCTTCACCGGCGCCCATGCCGACAAGCCGGGACTGTTCCAGGCCGCACACGGCGGCACCCTGTTCCTGGATGAA
GTGGCCGAGCTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGTGCGATCCAGGAAAAATCGGTGCGCGCGGTGGGCGCTCC
CAGCGAAGAACCGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGATCTGGCCGAGCTGGTCGAAGACGGGCGCTTCC
GCCACGACCTCTACTACCGCATCAACGTCATCGAACTGCGCGTACCGCCGCTGCGCGAGCGTCGCCAGGACCTGCCCGCA
CTGGCGGCGTCGATCCTGGCGCGGCTGGCCCGCAGCCACGGCCGCGCCACCCCGCTGCTGGCGCCGTCGGCGCTGGACGC
GTTGGCCCAGTACGGCTTCCCCGGCAACGTGCGCGAGCTGGAGAACATCCTGGAACGCGCGCTGGCACTGGCCGAGGAAG
ACCGTATCGGCGCCGACGACCTGCGCCTGCCGCAGCATGCGCAGCGCTCACCCGGCAGCGCTGCGCACGCTGAAGCCGTG
GTCGATCTGCACCCGGGCAGTGCCGCCCTGCCCTCGTATATCGAACAGCTCGAGCGCAGTGCCATCCAGCGCGCGCTGGA
AGAAAACCGCTGGAACAAGACCCGCACAGCTGCGCAGTTGGGCATCACCTTCCGTGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAATAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

• Response regulator receiver domain (Response_reg) (8-114)

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.377	99.781	0.632
pilR	Acinetobacter baumannii strain A118	47.835	100	0.484