Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   QJV49_RS06555 Genome accession   NZ_CP124538
Coordinates   1304128..1304619 (-) Length   163 a.a.
NCBI ID   WP_225512960.1    Uniprot ID   -
Organism   Lactococcus sp. NH2-7C     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1299128..1309619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJV49_RS06555 (QJV49_06555) comX 1304128..1304619 (-) 492 WP_225512960.1 sigma-70 family RNA polymerase sigma factor Regulator
  QJV49_RS06560 (QJV49_06560) ezrA 1304875..1306605 (-) 1731 WP_225512961.1 septation ring formation regulator EzrA -
  QJV49_RS06565 (QJV49_06565) tsf 1306810..1307838 (-) 1029 WP_225512962.1 translation elongation factor Ts -
  QJV49_RS06570 (QJV49_06570) rpsB 1307962..1308729 (-) 768 WP_011836067.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19858.74 Da        Isoelectric Point: 5.6178

>NTDB_id=826339 QJV49_RS06555 WP_225512960.1 1304128..1304619(-) (comX) [Lactococcus sp. NH2-7C]
MTYYLEEEDFESLFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQSNNQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWIYSGETGPDNEVVFNHLMAEVYEGLSAHYQELLLRQMRGEELSRMERYRLREKIKAILFSE
DED

Nucleotide


Download         Length: 492 bp        

>NTDB_id=826339 QJV49_RS06555 WP_225512960.1 1304128..1304619(-) (comX) [Lactococcus sp. NH2-7C]
ATGACATACTACTTGGAAGAAGAAGATTTTGAAAGTCTATTTTCAGAAATGAAACCTATAGTGATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAAGATTATCTTCAAGAAGGGATGATTATTCTACATCTTCTATTAGAGGAACAGA
GCAATAACCAGAAGCTCCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATTGATGAATTAAGACGGAGTTATGCA
AAAAAACGAAGTCATGATCATTTTATAGGTTTAGACGTTTATGAATGCTCAGACTGGATATATTCAGGTGAGACTGGTCC
AGATAATGAAGTAGTTTTTAATCATTTGATGGCAGAAGTATATGAAGGTTTGAGCGCGCATTATCAAGAGTTGTTACTTA
GACAAATGCGAGGGGAAGAATTGAGTCGGATGGAACGGTATCGTCTGCGAGAAAAAATAAAGGCTATATTATTTTCAGAA
GATGAAGATTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

92.638

100

0.926
  comX Lactococcus lactis subsp. cremoris KW2

76.687

100

0.767