Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   SE693_RS11080 Genome accession   NZ_CP138412
Coordinates   2311936..2312673 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 50EVA     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2306936..2317673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE693_RS11050 yfiL 2307094..2307459 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  SE693_RS11055 aroF 2307669..2308739 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  SE693_RS11060 tyrA 2308750..2309871 (+) 1122 WP_000225202.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  SE693_RS11065 pheA 2309914..2311074 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  SE693_RS11070 pheL 2311173..2311220 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  SE693_RS11075 raiA 2311324..2311665 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  SE693_RS11080 comL 2311936..2312673 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  SE693_RS11085 rluD 2312808..2313788 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  SE693_RS11090 yfiH 2313785..2314516 (+) 732 WP_000040128.1 purine nucleoside phosphorylase YfiH -
  SE693_RS11095 clpC 2314646..2317219 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=826060 SE693_RS11080 WP_000197686.1 2311936..2312673(-) (comL) [Escherichia coli strain 50EVA]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=826060 SE693_RS11080 WP_000197686.1 2311936..2312673(-) (comL) [Escherichia coli strain 50EVA]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376