Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   SE699_RS07065 Genome accession   NZ_CP138399
Coordinates   1446637..1447374 (-) Length   245 a.a.
NCBI ID   WP_000197673.1    Uniprot ID   -
Organism   Escherichia coli strain 64EVA     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1441637..1452374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE699_RS07035 yfiL 1441795..1442160 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  SE699_RS07040 aroF 1442370..1443440 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  SE699_RS07045 tyrA 1443451..1444572 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  SE699_RS07050 pheA 1444615..1445775 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  SE699_RS07055 pheL 1445874..1445921 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  SE699_RS07060 raiA 1446025..1446366 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  SE699_RS07065 comL 1446637..1447374 (-) 738 WP_000197673.1 outer membrane protein assembly factor BamD Machinery gene
  SE699_RS07070 rluD 1447509..1448489 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  SE699_RS07075 yfiH 1448486..1449217 (+) 732 WP_021553789.1 purine nucleoside phosphorylase YfiH -
  SE699_RS07080 clpC 1449347..1451920 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27843.47 Da        Isoelectric Point: 7.1587

>NTDB_id=825890 SE699_RS07065 WP_000197673.1 1446637..1447374(-) (comL) [Escherichia coli strain 64EVA]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPKSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=825890 SE699_RS07065 WP_000197673.1 1446637..1447374(-) (comL) [Escherichia coli strain 64EVA]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAAAAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.115

99.592

0.38
  comL Neisseria gonorrhoeae MS11

37.295

99.592

0.371