Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   R8635_RS08720 Genome accession   NZ_AP026924
Coordinates   1684296..1685345 (-) Length   349 a.a.
NCBI ID   WP_000653771.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700063     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1679296..1690345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8635_RS08690 (PC0062_17280) - 1679471..1680832 (+) 1362 Protein_1727 bacteriocin secretion accessory protein -
  R8635_RS08695 (PC0062_17290) blpC 1680889..1681017 (+) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -
  R8635_RS08700 (PC0062_17300) - 1681088..1682428 (-) 1341 WP_001017646.1 sensor histidine kinase -
  R8635_RS08705 (PC0062_17310) comE/blpR 1682442..1683179 (-) 738 WP_001219120.1 LytTR family DNA-binding domain-containing protein Regulator
  R8635_RS08710 (PC0062_17320) - 1683184..1683522 (-) 339 WP_000682120.1 LytTR family DNA-binding domain-containing protein -
  R8635_RS08715 (PC0062_17330) - 1683799..1684128 (+) 330 WP_000132572.1 hypothetical protein -
  R8635_RS08720 (PC0062_17340) pptB 1684296..1685345 (-) 1050 WP_000653771.1 ABC transporter permease Regulator
  R8635_RS08725 (PC0062_17350) pptA 1685342..1686073 (-) 732 WP_001866897.1 ABC transporter ATP-binding protein Regulator
  R8635_RS08730 (PC0062_17360) - 1686141..1686551 (+) 411 WP_001278301.1 HIT family protein -
  R8635_RS08735 (PC0062_17370) - 1686561..1686848 (+) 288 WP_268217887.1 hypothetical protein -
  R8635_RS08740 (PC0062_17380) dnaJ 1687215..1688351 (-) 1137 WP_317657538.1 molecular chaperone DnaJ -
  R8635_RS08745 (PC0062_17390) - 1688753..1689109 (-) 357 WP_000114433.1 hypothetical protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40556.62 Da        Isoelectric Point: 10.0008

>NTDB_id=82579 R8635_RS08720 WP_000653771.1 1684296..1685345(-) (pptB) [Streptococcus pneumoniae strain PZ900700063]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=82579 R8635_RS08720 WP_000653771.1 1684296..1685345(-) (pptB) [Streptococcus pneumoniae strain PZ900700063]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATTAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTATATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTTACTGAAACTGGA
CTGGACTGGGACTATGTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTATTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTGGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479

  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47


Multiple sequence alignment