Detailed information NTG0082500

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: R8625_RS10880
• Genome accession: NZ_AP026923
• Coordinates: 2083459..2084556 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266670.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain PZ900700054
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2078459..2089556

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8625_RS10855 (PC0054_20980)	pgsA	2078980..2079525 (-)	546	WP_000712132.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
R8625_RS10860 (PC0054_20990)	rodZ	2079536..2080357 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
R8625_RS10865 (PC0054_21000)	yfmH	2080399..2081682 (-)	1284	WP_000170183.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
R8625_RS10870 (PC0054_21010)	yfmF	2081679..2082929 (-)	1251	WP_000424272.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
R8625_RS10875 (PC0054_21020)	yaaA	2083088..2083456 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
R8625_RS10880 (PC0054_21030)	recF	2083459..2084556 (+)	1098	WP_000266670.1	DNA replication/repair protein RecF	Machinery gene
R8625_RS10885 (PC0054_21040)	guaB	2084607..2086085 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
R8625_RS10890 (PC0054_21050)	trpS	2086237..2087262 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
R8625_RS10895 (PC0054_21060)	-	2087468..2089090 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41927.06 Da
• Isoelectric Point: 9.3082

>NTDB_id=82500 R8625_RS10880 WP_000266670.1 2083459..2084556(+) (recF) [Streptococcus pneumoniae strain PZ900700054]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSVQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQNGKAAVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=82500 R8625_RS10880 WP_000266670.1 2083459..2084556(+) (recF) [Streptococcus pneumoniae strain PZ900700054]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAGCTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGTTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCGATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGAATGGTAAAGCTGCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	99.178	100	0.992
recF	Bacillus subtilis subsp. subtilis str. 168	46.175	100	0.463