Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   SE087_RS09410 Genome accession   NZ_CP138360
Coordinates   1937505..1938128 (-) Length   207 a.a.
NCBI ID   WP_319081220.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 17CS1042     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1932505..1943128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE087_RS09385 (SE087_09385) - 1932695..1933891 (-) 1197 WP_112380439.1 metallophosphoesterase family protein -
  SE087_RS09390 (SE087_09390) - 1934188..1934286 (-) 99 WP_014532656.1 hypothetical protein -
  SE087_RS09395 (SE087_09395) - 1934969..1935313 (-) 345 WP_000290301.1 YlbF/YmcA family competence regulator -
  SE087_RS09400 (SE087_09400) - 1935382..1936506 (-) 1125 WP_319081192.1 DUF445 domain-containing protein -
  SE087_RS09405 (SE087_09405) xdrA 1936685..1937149 (-) 465 WP_000375864.1 XRE family transcriptional regulator XdrA -
  SE087_RS09410 (SE087_09410) vraR 1937505..1938128 (-) 624 WP_319081220.1 response regulator transcription factor Regulator
  SE087_RS09415 (SE087_09415) - 1938150..1939262 (-) 1113 WP_000437964.1 GAF domain-containing sensor histidine kinase -
  SE087_RS09420 (SE087_09420) - 1939425..1940246 (+) 822 WP_217176138.1 RluA family pseudouridine synthase -
  SE087_RS09425 (SE087_09425) fumC 1940710..1942095 (-) 1386 WP_000116236.1 class II fumarate hydratase -
  SE087_RS09430 (SE087_09430) - 1942291..1942686 (-) 396 WP_000901023.1 hypothetical protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23935.58 Da        Isoelectric Point: 5.7768

>NTDB_id=824972 SE087_RS09410 WP_319081220.1 1937505..1938128(-) (vraR) [Staphylococcus aureus strain 17CS1042]
MNKVILVDDHYIVRQGLRFLLSTIENIEVLQDFADGETFLEYLKEHEHPDIVLLDLVMHGMNGIEITEYIKAHYPDIKVL
VLTSYVDDEHVISAINKGADGYEMKDVEPQQLIETIRRVMNGEKMIHPKAQDVFETVSQKPHYTNKLSKREIEVLREMVK
GKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI

Nucleotide


Download         Length: 624 bp        

>NTDB_id=824972 SE087_RS09410 WP_319081220.1 1937505..1938128(-) (vraR) [Staphylococcus aureus strain 17CS1042]
ATGAACAAAGTAATATTAGTAGATGACCATTATATTGTGCGACAAGGATTGCGATTTTTATTATCCACGATTGAAAACAT
AGAAGTTTTACAAGACTTTGCAGATGGAGAAACATTTTTAGAATATTTAAAAGAGCATGAGCACCCTGATATTGTGCTAT
TAGATTTAGTGATGCATGGCATGAATGGTATTGAAATTACGGAATATATTAAGGCACATTATCCGGATATTAAAGTTTTG
GTATTAACAAGTTATGTTGATGATGAACATGTAATTTCAGCAATCAATAAAGGTGCTGATGGTTATGAAATGAAAGACGT
TGAGCCTCAGCAATTAATTGAAACTATTAGACGAGTTATGAACGGTGAAAAAATGATACATCCTAAGGCACAAGATGTAT
TCGAAACAGTTAGCCAAAAACCACACTACACGAATAAGTTGTCAAAGAGAGAAATTGAAGTGTTACGTGAAATGGTTAAA
GGTAAAACAAATAAAGAGATAGCAGAAACTTTATTTGTATCTGAAAAAACAATTAAAACACATGTCAGTCATATATTTAG
TAAATTACAAGTTAGCGATCGTACACAAGCAGCAATTTATGCAATGGAAAATAAGTTGATTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(146-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.58

100

0.406
  degU Bacillus subtilis subsp. subtilis str. 168

34.685

100

0.372