Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   M2Y46_RS05320 Genome accession   NZ_AP023347
Coordinates   1116315..1116719 (-) Length   134 a.a.
NCBI ID   WP_248415198.1    Uniprot ID   -
Organism   Helicobacter pylori strain JSHR6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1111315..1121719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Y46_RS05280 (JSHR6_10520) - 1111366..1112463 (-) 1098 WP_248415195.1 hypothetical protein -
  M2Y46_RS05285 - 1112453..1113238 (-) 786 WP_212883482.1 hypothetical protein -
  M2Y46_RS05290 - 1113238..1113619 (-) 382 Protein_1031 DUF1294 domain-containing protein -
  M2Y46_RS05295 - 1113942..1114103 (-) 162 WP_017282730.1 hypothetical protein -
  M2Y46_RS05300 (JSHR6_10540) - 1114168..1114503 (-) 336 WP_248415196.1 lysozyme -
  M2Y46_RS05305 (JSHR6_10550) - 1114633..1115193 (-) 561 WP_248415197.1 hypothetical protein -
  M2Y46_RS05310 (JSHR6_10560) - 1115177..1115515 (-) 339 WP_000699911.1 hypothetical protein -
  M2Y46_RS07490 (JSHR6_10570) - 1115712..1115966 (-) 255 WP_282568807.1 tetratricopeptide repeat protein -
  M2Y46_RS07495 (JSHR6_10580) - 1116002..1116175 (-) 174 WP_249406027.1 tetratricopeptide repeat protein -
  M2Y46_RS05320 (JSHR6_10590) dprB 1116315..1116719 (-) 405 WP_248415198.1 Holliday junction resolvase RuvX Machinery gene
  M2Y46_RS05325 (JSHR6_10600) dprA 1116716..1117516 (-) 801 WP_180503901.1 DNA-processing protein DprA Machinery gene
  M2Y46_RS05330 (JSHR6_10610) minE 1117523..1117756 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  M2Y46_RS05335 (JSHR6_10620) minD 1117753..1118559 (-) 807 WP_024116666.1 septum site-determining protein MinD -
  M2Y46_RS05340 (JSHR6_10630) ilvC 1118584..1119576 (-) 993 WP_248415199.1 ketol-acid reductoisomerase -
  M2Y46_RS05350 (JSHR6_10640) - 1119825..1120607 (+) 783 WP_248415200.1 NAD+ synthase -
  M2Y46_RS05355 (JSHR6_10650) - 1120604..1121542 (+) 939 WP_248415201.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15204.62 Da        Isoelectric Point: 9.1839

>NTDB_id=82495 M2Y46_RS05320 WP_248415198.1 1116315..1116719(-) (dprB) [Helicobacter pylori strain JSHR6]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRNLSDLLREKNIQVLVVGKPNESYADTHARIEHFIKLVGFKGE
IVFINEDNSSIEAYDNLEHLGRKNKRLATKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=82495 M2Y46_RS05320 WP_248415198.1 1116315..1116719(-) (dprB) [Helicobacter pylori strain JSHR6]
ATGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGTGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGAATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACCCACGCCCGCATTGAGCATTTTATCAAGCTTGTAGGTTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCCAGCATAGAAGCTTATGATAATTTAGAGCATTTGGGTAGGAAAAACAAGCGGCT
CGCTACCAAAGACGGCCGGCTAGATTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

91.729

99.254

0.91

Multiple sequence alignment