Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   SE147_RS11110 Genome accession   NZ_CP138342
Coordinates   2114663..2114806 (-) Length   47 a.a.
NCBI ID   WP_003691943.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TH1713     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2109663..2119806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE147_RS11095 (SE147_11105) pilA 2111030..2112283 (+) 1254 WP_319078437.1 signal recognition particle-docking protein FtsY Machinery gene
  SE147_RS11100 (SE147_11110) - 2112548..2113201 (-) 654 WP_406947599.1 opacity family porin -
  SE147_RS11105 (SE147_11115) - 2113792..2114294 (-) 503 Protein_2141 pilin -
  SE147_RS11110 (SE147_11120) pilE 2114663..2114806 (-) 144 WP_003691943.1 hypothetical protein Machinery gene
  SE147_RS11115 (SE147_11125) - 2115271..2115591 (-) 321 Protein_2143 pilin -
  SE147_RS11120 (SE147_11130) - 2115557..2116009 (-) 453 Protein_2144 pilin -
  SE147_RS11125 (SE147_11135) lpxC 2116138..2117061 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  SE147_RS11135 (SE147_11145) pilE 2117728..2118168 (-) 441 WP_319078439.1 pilin Machinery gene
  SE147_RS11140 (SE147_11150) - 2118264..2118703 (-) 440 Protein_2147 pilin -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5034.54 Da        Isoelectric Point: 7.2428

>NTDB_id=824896 SE147_RS11110 WP_003691943.1 2114663..2114806(-) (pilE) [Neisseria gonorrhoeae strain TH1713]
MTGFNDAAGNDKIDTKHLPSTCRDKSSAVCTKHHAPISNAFQENGAF

Nucleotide


Download         Length: 144 bp        

>NTDB_id=824896 SE147_RS11110 WP_003691943.1 2114663..2114806(-) (pilE) [Neisseria gonorrhoeae strain TH1713]
ATGACGGGATTTAATGATGCCGCCGGCAACGACAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATC
TGCCGTTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAACGGAGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70

63.83

0.447