Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   SE147_RS11135 Genome accession   NZ_CP138342
Coordinates   2117728..2118168 (-) Length   146 a.a.
NCBI ID   WP_319078439.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TH1713     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2112728..2123168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE147_RS11105 (SE147_11115) - 2113792..2114294 (-) 503 Protein_2141 pilin -
  SE147_RS11110 (SE147_11120) pilE 2114663..2114806 (-) 144 WP_003691943.1 hypothetical protein Machinery gene
  SE147_RS11115 (SE147_11125) - 2115271..2115591 (-) 321 Protein_2143 pilin -
  SE147_RS11120 (SE147_11130) - 2115557..2116009 (-) 453 Protein_2144 pilin -
  SE147_RS11125 (SE147_11135) lpxC 2116138..2117061 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  SE147_RS11135 (SE147_11145) pilE 2117728..2118168 (-) 441 WP_319078439.1 pilin Machinery gene
  SE147_RS11140 (SE147_11150) - 2118264..2118703 (-) 440 Protein_2147 pilin -
  SE147_RS11145 (SE147_11155) - 2119229..2119957 (-) 729 WP_353114220.1 pilin -
  SE147_RS11150 (SE147_11160) - 2119983..2120198 (-) 216 Protein_2149 pilin -
  SE147_RS11155 (SE147_11165) - 2120528..2120719 (+) 192 WP_014580443.1 hypothetical protein -
  SE147_RS11160 (SE147_11170) - 2120783..2121472 (-) 690 WP_003696506.1 SprT family zinc-dependent metalloprotease -
  SE147_RS11165 (SE147_11175) - 2121469..2122212 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  SE147_RS11170 (SE147_11180) gmhB 2122242..2122805 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15755.55 Da        Isoelectric Point: 7.1360

>NTDB_id=824897 SE147_RS11135 WP_319078439.1 2117728..2118168(-) (pilE) [Neisseria gonorrhoeae strain TH1713]
MPTRLDSRLRGNDEAILLAEGQKSAVTEYYLNHGTWPENNGDAGVASASKIIGKYVKQVEVKNGVVTAQMASTGVNKEIQ
DKKLSLWAKREDGSVKWFCGQPVTRTEANAKAGTDDVAKADTTGKDKEIDTKHLPSTCRDESSAGT

Nucleotide


Download         Length: 441 bp        

>NTDB_id=824897 SE147_RS11135 WP_319078439.1 2117728..2118168(-) (pilE) [Neisseria gonorrhoeae strain TH1713]
GTGCCGACAAGGCTGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCACATGGCCGGAAAACAACGGTGATGCCGGCGTGGCATCCGCTTCAAAAATCATAGGCA
AATATGTTAAGCAAGTTGAAGTCAAAAACGGCGTCGTTACCGCCCAAATGGCTTCAACCGGCGTAAACAAAGAAATCCAA
GACAAAAAACTCTCCCTGTGGGCCAAGCGTGAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCACCGA
AGCCAACGCCAAAGCCGGCACCGACGACGTCGCCAAAGCCGACACCACCGGCAAAGACAAAGAAATCGACACCAAGCACC
TGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTACGTGA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(14-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

72.414

99.315

0.719
  pilE Neisseria gonorrhoeae MS11

68.493

100

0.685