Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | M2Y46_RS00285 | Genome accession | NZ_AP023347 |
| Coordinates | 63974..64549 (+) | Length | 191 a.a. |
| NCBI ID | WP_096482212.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain JSHR6 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 58974..69549
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M2Y46_RS00260 (JSHR6_00530) | uvrD | 59665..61710 (+) | 2046 | WP_248415424.1 | ATP-dependent helicase | - |
| M2Y46_RS00265 (JSHR6_00540) | flgA | 61707..62363 (+) | 657 | WP_248415425.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| M2Y46_RS00270 (JSHR6_00550) | - | 62373..62936 (+) | 564 | WP_223887570.1 | UbiX family flavin prenyltransferase | - |
| M2Y46_RS00275 (JSHR6_00560) | coaD | 62936..63409 (+) | 474 | WP_001169259.1 | pantetheine-phosphate adenylyltransferase | - |
| M2Y46_RS00280 (JSHR6_00570) | tmk | 63411..63986 (+) | 576 | WP_248415426.1 | dTMP kinase | - |
| M2Y46_RS00285 (JSHR6_00580) | comFC | 63974..64549 (+) | 576 | WP_096482212.1 | ComF family protein | Machinery gene |
| M2Y46_RS00290 (JSHR6_00590) | - | 64582..66621 (+) | 2040 | WP_248415427.1 | N-6 DNA methylase | - |
| M2Y46_RS00295 (JSHR6_00600) | - | 66618..67274 (+) | 657 | WP_248415428.1 | restriction endonuclease subunit S | - |
| M2Y46_RS00300 (JSHR6_00610) | - | 67301..67858 (+) | 558 | WP_248415429.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21339.93 Da Isoelectric Point: 9.0940
>NTDB_id=82484 M2Y46_RS00285 WP_096482212.1 63974..64549(+) (comFC) [Helicobacter pylori strain JSHR6]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAVLLKGFCQGNLKPTYGRLRATNTISYAGKSLEFRANNPRNFTFKGDETLDYFLLDDII
TTGTTLKEALKYLKTLNTKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAVLLKGFCQGNLKPTYGRLRATNTISYAGKSLEFRANNPRNFTFKGDETLDYFLLDDII
TTGTTLKEALKYLKTLNTKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=82484 M2Y46_RS00285 WP_096482212.1 63974..64549(+) (comFC) [Helicobacter pylori strain JSHR6]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTGAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGTGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAACTTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACACAAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTGAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGTGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAACTTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACACAAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.764 |
100 |
0.948 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |