Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   SE146_RS10200 Genome accession   NZ_CP138339
Coordinates   1945181..1945576 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TH2288     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1940181..1950576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE146_RS10180 (SE146_10165) rfbC 1940258..1940815 (+) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  SE146_RS10185 (SE146_10170) - 1940859..1942877 (-) 2019 WP_003690172.1 OPT family oligopeptide transporter -
  SE146_RS10190 (SE146_10175) dnaJ 1943072..1944193 (-) 1122 WP_123768239.1 molecular chaperone DnaJ -
  SE146_RS10195 (SE146_10180) - 1944327..1944656 (+) 330 Protein_1970 transposase -
  SE146_RS10200 (SE146_10185) comE 1945181..1945576 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  SE146_RS10205 (SE146_10190) - 1945681..1945797 (-) 117 Protein_1972 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=824816 SE146_RS10200 WP_003703428.1 1945181..1945576(-) (comE) [Neisseria gonorrhoeae strain TH2288]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=824816 SE146_RS10200 WP_003703428.1 1945181..1945576(-) (comE) [Neisseria gonorrhoeae strain TH2288]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1