Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | M2Y57_RS00270 | Genome accession | NZ_AP023345 |
| Coordinates | 60737..61312 (+) | Length | 191 a.a. |
| NCBI ID | WP_248426050.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain JSHR31 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 55737..66312
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M2Y57_RS00245 (JSHR31_00490) | uvrD | 56428..58473 (+) | 2046 | WP_212787959.1 | ATP-dependent helicase | - |
| M2Y57_RS00250 (JSHR31_00500) | flgA | 58470..59126 (+) | 657 | WP_248426049.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| M2Y57_RS00255 (JSHR31_00510) | - | 59136..59699 (+) | 564 | WP_000780125.1 | UbiX family flavin prenyltransferase | - |
| M2Y57_RS00260 (JSHR31_00520) | coaD | 59699..60172 (+) | 474 | WP_154508494.1 | pantetheine-phosphate adenylyltransferase | - |
| M2Y57_RS00265 (JSHR31_00530) | tmk | 60174..60749 (+) | 576 | WP_220862421.1 | dTMP kinase | - |
| M2Y57_RS00270 (JSHR31_00540) | comFC | 60737..61312 (+) | 576 | WP_248426050.1 | ComF family protein | Machinery gene |
| M2Y57_RS00275 (JSHR31_00550) | - | 61345..63384 (+) | 2040 | WP_248426052.1 | class I SAM-dependent DNA methyltransferase | - |
| M2Y57_RS00280 (JSHR31_00560) | - | 63381..64607 (+) | 1227 | WP_248426053.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21309.92 Da Isoelectric Point: 8.3533
>NTDB_id=82464 M2Y57_RS00270 WP_248426050.1 60737..61312(+) (comFC) [Helicobacter pylori strain JSHR31]
MRCLTCLKLSFKPLCLNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGCLRADNAVSYAGKSLEFRANNPRNFTFKGDETLDYFLLDDII
TTGTTLKEALKYLKTLNIKVHFAIALCSADE
MRCLTCLKLSFKPLCLNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGCLRADNAVSYAGKSLEFRANNPRNFTFKGDETLDYFLLDDII
TTGTTLKEALKYLKTLNIKVHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=82464 M2Y57_RS00270 WP_248426050.1 60737..61312(+) (comFC) [Helicobacter pylori strain JSHR31]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCTTAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTGAAAGG
CTTTTGTCAAGGCAATTTAAAGCCTACTTACGGGTGTTTAAGGGCTGATAATGCTGTTTCGTATGCCGGGAAAAGCCTAG
AATTTCGTGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAACTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCTTAAAATACCTTAAAACCCTAAACATCAAAGTGCACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCTTAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTGAAAGG
CTTTTGTCAAGGCAATTTAAAGCCTACTTACGGGTGTTTAAGGGCTGATAATGCTGTTTCGTATGCCGGGAAAAGCCTAG
AATTTCGTGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAACTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCTTAAAATACCTTAAAACCCTAAACATCAAAGTGCACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
97.906 |
100 |
0.979 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
38.144 |
100 |
0.387 |