Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   SD207_RS01550 Genome accession   NZ_CP138324
Coordinates   329558..330007 (+) Length   149 a.a.
NCBI ID   WP_114155191.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain JBAB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 324558..335007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD207_RS01520 (SD207_01520) - 325021..327126 (-) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  SD207_RS01525 (SD207_01525) - 327166..327296 (-) 131 Protein_290 hypothetical protein -
  SD207_RS01530 (SD207_01530) rpoZ 327335..327613 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  SD207_RS01535 (SD207_01535) gmk 327686..328315 (-) 630 WP_000015937.1 guanylate kinase -
  SD207_RS01540 (SD207_01540) ispH 328438..329388 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SD207_RS01545 (SD207_01545) - 329401..329652 (-) 252 Protein_294 hypothetical protein -
  SD207_RS01550 (SD207_01550) fimU 329558..330007 (+) 450 WP_114155191.1 GspH/FimT family pseudopilin Machinery gene
  SD207_RS01555 (SD207_01555) pilV 330004..330504 (+) 501 WP_262094045.1 type IV pilus modification protein PilV Machinery gene
  SD207_RS01560 (SD207_01560) pilW 330506..331543 (+) 1038 WP_262094044.1 PilW family protein Machinery gene
  SD207_RS01565 (SD207_01565) - 331540..332322 (+) 783 WP_031963609.1 pilus assembly PilX N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16121.76 Da        Isoelectric Point: 8.5176

>NTDB_id=824587 SD207_RS01550 WP_114155191.1 329558..330007(+) (fimU) [Acinetobacter baumannii strain JBAB]
MRGIIPQEGFTLVELMVTIAVMAIIAMMAAPMFGDLLINQNLNRSTEELVSSINQARMKAVVERRQVKVQLNSTYIADTD
NQINWMPSGKAQLKTGSDTSIIFLMSGLVKDATGDTTFEICNKTGGNKSKIISVSRMGAIQSTTVGTCS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=824587 SD207_RS01550 WP_114155191.1 329558..330007(+) (fimU) [Acinetobacter baumannii strain JBAB]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACAATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCGCCAATGTTTGGGGATCTGTTAATTAATCAAAATTTGAATAGAAGTACAGAGGAGCTGGTTTCAAGTATAA
ATCAGGCACGTATGAAAGCTGTGGTAGAACGTAGACAAGTAAAAGTGCAATTAAATTCTACTTATATTGCAGATACTGAT
AATCAAATTAATTGGATGCCAAGCGGAAAAGCTCAATTAAAGACGGGATCTGATACCTCTATAATATTTCTGATGTCCGG
TTTAGTAAAAGACGCAACCGGAGATACTACATTCGAAATTTGTAATAAGACTGGTGGTAATAAATCAAAAATTATTAGTG
TTTCAAGAATGGGAGCAATTCAATCGACTACGGTGGGGACATGTTCATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

40.252

100

0.43