Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   SD207_RS01555 Genome accession   NZ_CP138324
Coordinates   330004..330504 (+) Length   166 a.a.
NCBI ID   WP_262094045.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain JBAB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 325004..335504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD207_RS01520 (SD207_01520) - 325021..327126 (-) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  SD207_RS01525 (SD207_01525) - 327166..327296 (-) 131 Protein_290 hypothetical protein -
  SD207_RS01530 (SD207_01530) rpoZ 327335..327613 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  SD207_RS01535 (SD207_01535) gmk 327686..328315 (-) 630 WP_000015937.1 guanylate kinase -
  SD207_RS01540 (SD207_01540) ispH 328438..329388 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SD207_RS01545 (SD207_01545) - 329401..329652 (-) 252 Protein_294 hypothetical protein -
  SD207_RS01550 (SD207_01550) fimU 329558..330007 (+) 450 WP_114155191.1 GspH/FimT family pseudopilin Machinery gene
  SD207_RS01555 (SD207_01555) pilV 330004..330504 (+) 501 WP_262094045.1 type IV pilus modification protein PilV Machinery gene
  SD207_RS01560 (SD207_01560) pilW 330506..331543 (+) 1038 WP_262094044.1 PilW family protein Machinery gene
  SD207_RS01565 (SD207_01565) - 331540..332322 (+) 783 WP_031963609.1 pilus assembly PilX N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18282.88 Da        Isoelectric Point: 4.8719

>NTDB_id=824588 SD207_RS01555 WP_262094045.1 330004..330504(+) (pilV) [Acinetobacter baumannii strain JBAB]
MKKIAHQRGMGMIEILVALLILVIGVLGFIALQYRALEASAESTSRVQAITIARDIAERIRVNRNSLAVYNQQLQDPIKQ
KDFVKDCFQDNCSDTDLADFDVAQVVKNASSLGMTMNMIACPQTKNRQCVYIAWGDTSATNGTSAGDCTQDTAYNDNSTC
VIMETY

Nucleotide


Download         Length: 501 bp        

>NTDB_id=824588 SD207_RS01555 WP_262094045.1 330004..330504(+) (pilV) [Acinetobacter baumannii strain JBAB]
ATGAAGAAGATTGCACACCAACGTGGTATGGGAATGATTGAAATTTTAGTTGCTTTGCTGATTTTAGTAATTGGAGTTTT
AGGATTTATTGCTTTGCAATATAGAGCTTTAGAGGCAAGTGCAGAAAGCACTTCACGCGTACAAGCAATTACGATAGCAC
GCGATATAGCTGAGCGGATTAGAGTTAACCGTAATTCATTAGCTGTGTATAACCAACAACTTCAAGATCCTATTAAACAG
AAAGACTTTGTCAAAGATTGCTTCCAAGACAATTGTAGTGACACAGATTTAGCAGATTTCGATGTTGCACAAGTAGTGAA
AAATGCGTCTTCCTTGGGCATGACTATGAATATGATTGCTTGCCCACAAACTAAAAATCGACAATGTGTTTATATTGCAT
GGGGTGATACTAGTGCAACGAATGGCACCAGTGCAGGGGATTGTACTCAAGATACTGCATATAACGATAATTCAACGTGT
GTGATTATGGAGACCTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baylyi ADP1

39.56

100

0.434
  pilV Acinetobacter baumannii D1279779

39.106

100

0.422