Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   SC043_RS06695 Genome accession   NZ_CP138309
Coordinates   1329547..1330782 (-) Length   411 a.a.
NCBI ID   WP_010905787.1    Uniprot ID   Q9CGE6
Organism   Lactococcus lactis strain B26     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1324547..1335782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC043_RS06665 (SC043_06665) - 1324558..1325841 (-) 1284 WP_003132113.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  SC043_RS06670 (SC043_06670) - 1325860..1326357 (-) 498 WP_003132112.1 NUDIX domain-containing protein -
  SC043_RS06675 (SC043_06675) folP 1326360..1327433 (-) 1074 WP_003132109.1 dihydropteroate synthase -
  SC043_RS06680 (SC043_06680) folE 1327430..1328479 (-) 1050 WP_010905789.1 GTP cyclohydrolase I FolE -
  SC043_RS06685 (SC043_06685) folB 1328559..1328909 (-) 351 WP_003132106.1 dihydroneopterin aldolase -
  SC043_RS06690 (SC043_06690) yihA 1328963..1329550 (-) 588 WP_010905788.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  SC043_RS06695 (SC043_06695) clpX 1329547..1330782 (-) 1236 WP_010905787.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  SC043_RS06700 (SC043_06700) - 1331026..1331532 (-) 507 WP_010905786.1 dihydrofolate reductase -
  SC043_RS06705 (SC043_06705) - 1331931..1332440 (+) 510 WP_010905785.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  SC043_RS06710 (SC043_06710) - 1332560..1332973 (+) 414 WP_003132097.1 hypothetical protein -
  SC043_RS06715 (SC043_06715) - 1333002..1334306 (-) 1305 WP_003132095.1 nucleobase:cation symporter-2 family protein -
  SC043_RS06720 (SC043_06720) - 1334355..1334948 (-) 594 WP_003132093.1 xanthine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45976.83 Da        Isoelectric Point: 4.6053

>NTDB_id=824537 SC043_RS06695 WP_010905787.1 1329547..1330782(-) (clpX) [Lactococcus lactis strain B26]
MSNTQNPNIHCSFCGKSQDDVKKLIAGSDVYICNECIELSTRILEEELREEQDSEMLEVKTPKEMFDHLNEYVIGQEKAK
RALAVAVYNHYKRINFAASKIAEDIELQKSNILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILL
KLLQASDFNIERAERGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNI
LFIVGGAFDGIEEIVKQRLGEKIIGFGANNKKLNDDDSYMQEIIAEDIQKFGLIPEFIGRLPIVAALERLTEEDLIQILT
EPKNALIKQYKQLLLFDNVELEFEDEALMAIARKAIERKTGARGLRSIIEEVMMDIMFEVPSHEEITKVIINEAVVDGKA
EPQMIREAKKK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=824537 SC043_RS06695 WP_010905787.1 1329547..1330782(-) (clpX) [Lactococcus lactis strain B26]
ATGTCAAATACACAAAATCCAAATATACATTGTTCTTTCTGTGGAAAGAGTCAAGATGATGTAAAAAAATTGATTGCCGG
TTCAGACGTTTATATTTGTAATGAATGTATTGAACTTTCAACTCGAATCTTAGAAGAAGAATTAAGAGAAGAACAAGATT
CAGAAATGCTTGAAGTTAAAACACCTAAAGAAATGTTTGACCATTTAAATGAATATGTGATAGGTCAAGAAAAAGCAAAA
CGTGCACTTGCAGTTGCCGTTTATAATCATTACAAACGAATTAATTTTGCAGCAAGTAAAATTGCTGAAGATATTGAACT
ACAAAAATCAAATATTCTATTAATCGGACCTACCGGTTCTGGTAAGACTTTTCTCGCTCAAACTTTAGCGAAATCACTCA
ACGTTCCATTTGCGATTGCAGATGCGACAAGTTTAACTGAAGCTGGTTATGTTGGAGAAGACGTTGAAAATATTCTCTTA
AAACTTTTACAAGCGAGTGATTTCAATATTGAACGTGCTGAACGTGGAATTATCTATATCGATGAAATTGATAAAATTGC
TAAAAAATCTGAAAATGTATCAATTACTCGTGACGTTTCCGGGGAAGGTGTTCAACAAGCCCTTTTGAAAATTATTGAAG
GAACGGTAGCTAGTGTTCCACCACAAGGTGGACGTAAACATCCTAATCAAGAAATGATTCAAATTGATACCAAAAATATC
TTATTTATTGTTGGTGGAGCTTTTGACGGGATTGAAGAAATTGTCAAACAACGTTTAGGTGAAAAAATTATTGGTTTTGG
TGCCAATAATAAAAAATTAAATGACGATGATTCTTATATGCAAGAAATTATTGCCGAGGACATTCAAAAATTCGGATTAA
TTCCTGAATTTATTGGTCGTCTGCCAATTGTTGCTGCTTTGGAACGTTTGACCGAAGAGGATTTGATTCAAATTTTGACA
GAACCTAAAAATGCTTTGATTAAACAATATAAACAACTCCTTTTATTTGATAATGTTGAACTTGAATTTGAAGATGAAGC
CCTCATGGCAATTGCTAGAAAAGCAATTGAGCGCAAAACAGGAGCGCGTGGACTTCGTTCAATTATTGAAGAAGTAATGA
TGGATATCATGTTTGAAGTTCCAAGTCATGAAGAAATTACAAAAGTTATTATTAATGAAGCAGTTGTTGACGGAAAAGCT
GAGCCACAAATGATTCGAGAGGCCAAGAAAAAATGA

Domains

Predicted by InterProScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(10-46)

AAA domain (Cdc48 subfamily) (AAA_2)

(108-304)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(310-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CGE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

76.559

97.567

0.747
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.883

95.864

0.564