Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   M2Y48_RS02470 Genome accession   NZ_AP023344
Coordinates   506359..506763 (+) Length   134 a.a.
NCBI ID   WP_000599207.1    Uniprot ID   -
Organism   Helicobacter pylori strain JSHR3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 501359..511763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Y48_RS02435 (JSHR3_05060) - 501532..502470 (-) 939 WP_248420076.1 tetraacyldisaccharide 4'-kinase -
  M2Y48_RS02440 (JSHR3_05070) - 502467..503249 (-) 783 WP_120878727.1 NAD+ synthase -
  M2Y48_RS02450 (JSHR3_05080) ilvC 503497..504489 (+) 993 WP_248420078.1 ketol-acid reductoisomerase -
  M2Y48_RS02455 (JSHR3_05090) minD 504514..505320 (+) 807 WP_248420079.1 septum site-determining protein MinD -
  M2Y48_RS02460 (JSHR3_05100) minE 505317..505550 (+) 234 WP_050851278.1 cell division topological specificity factor MinE -
  M2Y48_RS02465 (JSHR3_05110) dprA 505562..506362 (+) 801 WP_248420081.1 DNA-processing protein DprA Machinery gene
  M2Y48_RS02470 (JSHR3_05120) dprB 506359..506763 (+) 405 WP_000599207.1 Holliday junction resolvase RuvX Machinery gene
  M2Y48_RS02475 (JSHR3_05130) - 506895..507257 (+) 363 WP_248420083.1 tetratricopeptide repeat protein -
  M2Y48_RS02480 (JSHR3_05140) - 507446..507784 (+) 339 WP_000699916.1 hypothetical protein -
  M2Y48_RS02485 (JSHR3_05150) - 507768..508328 (+) 561 WP_154462112.1 hypothetical protein -
  M2Y48_RS02490 (JSHR3_05160) - 508339..508653 (+) 315 WP_212846621.1 lysozyme -
  M2Y48_RS02495 (JSHR3_05170) - 508753..509019 (+) 267 WP_000404335.1 hypothetical protein -
  M2Y48_RS02500 - 509349..509737 (+) 389 Protein_495 DUF1294 domain-containing protein -
  M2Y48_RS02505 - 509737..510522 (+) 786 WP_108304232.1 hypothetical protein -
  M2Y48_RS02510 (JSHR3_05190) - 510512..511636 (+) 1125 WP_212893129.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15326.85 Da        Isoelectric Point: 8.7193

>NTDB_id=82451 M2Y48_RS02470 WP_000599207.1 506359..506763(+) (dprB) [Helicobacter pylori strain JSHR3]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=82451 M2Y48_RS02470 WP_000599207.1 506359..506763(+) (dprB) [Helicobacter pylori strain JSHR3]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGAGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.241

99.254

0.955

Multiple sequence alignment