Detailed information NTG0824384

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: R3F78_RS24855
• Genome accession: NZ_CP138301
• Coordinates: 4623720..4626134 (+)
• Length: 804 a.a.
• NCBI ID: WP_039147680.1
• Uniprot ID: -
• Organism: Bradyrhizobium japonicum strain CNPSo 29
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4618720..4631134

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R3F78_RS24840 (R3F78_24825)	-	4619662..4621512 (-)	1851	WP_039147678.1	D-alanyl-D-alanine carboxypeptidase	-
R3F78_RS24845 (R3F78_24830)	-	4621901..4622239 (+)	339	WP_014494653.1	phasin family protein	-
R3F78_RS24850 (R3F78_24835)	clpS	4623096..4623428 (+)	333	WP_014494655.1	ATP-dependent Clp protease adapter ClpS	-
R3F78_RS24855 (R3F78_24840)	clpC	4623720..4626134 (+)	2415	WP_039147680.1	ATP-dependent Clp protease ATP-binding subunit ClpA	Regulator
R3F78_RS24860 (R3F78_24845)	-	4626206..4626664 (-)	459	WP_039147682.1	PEGA domain-containing protein	-
R3F78_RS24865 (R3F78_24850)	-	4626787..4628208 (-)	1422	WP_051664561.1	MFS transporter	-
R3F78_RS24870 (R3F78_24855)	-	4628393..4629418 (-)	1026	WP_038936292.1	aldo/keto reductase	-
R3F78_RS24875 (R3F78_24860)	-	4629534..4629770 (-)	237	WP_039147684.1	hypothetical protein	-
R3F78_RS24880 (R3F78_24865)	-	4629870..4630826 (-)	957	WP_039147686.1	helix-turn-helix domain-containing protein	-

Sequence

Protein

• Length: 804 a.a.
• Molecular weight: 88256.56 Da
• Isoelectric Point: 6.7930

>NTDB_id=824384 R3F78_RS24855 WP_039147680.1 4623720..4626134(+) (clpC) [Bradyrhizobium japonicum strain CNPSo 29]
MPTFSQSLEQSLHRALAIANERHHQYATLEHLLLSLIDDSDAAAVMRACSVDLDKLRTSLVNYLETEFENLVTDGADDAK
PTAGFQRVIQRAVIHVQSSGREEVTGANVLIAIFAERESHAAYFLQEQDMTRYDAVNYISHGIAKRPGVSEARPVRGVDE
ETEAKGTEDAKKKGEALETYCVNLNKKARDGKIDPVIGRNSEINRAIQVLCRRQKNNPLFVGEAGVGKTAIAEGLAKRIV
DSEVPEVLAAATVFSLDMGTLLAGTRYRGDFEERLKQVLKELEAHPNAILFIDEIHTVIGAGATSGGAMDASNLLKPALA
SGTIRCMGSTTYKEYRQHFEKDRALVRRFQKIDINEPTVEDAIAILKGLKPYFEDYHRLKYTNEAIEAAVQLSSRYIHDR
KLPDKAIDVIDESGAAQMLVAENKRKKTIGIKEIETTIASMARIPPKSVSKDDAEVLKHLEQTLKRTVFGQDKAIESLAA
SIKLARAGLREPEKPIGCYLFSGPTGVGKTEVAKQLAASLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDG
VDQHPHCVVLLDEIEKAHPDLYNVLLQIMDHGRLTDHNGKQVNFGNVILIMTTNAGASDLAKQAFGFTRSKREGDDHEAI
NRQFAPEFRNRLDAIVSFGHLSVEVIGTVVEKFVLQLEAQLGDRDVTIELSEPAKNWLVQHGYDEQMGARPMARVIQEHI
KKPLADEVLFGKLKGGGHVRVVLVKDEADETKDKIGFEFLDGPITPKQEKLPGARKRPPGKSKPGGGGSGGSKGPTSKGP
LVKA

Nucleotide

• Length: 2415 bp

>NTDB_id=824384 R3F78_RS24855 WP_039147680.1 4623720..4626134(+) (clpC) [Bradyrhizobium japonicum strain CNPSo 29]
ATGCCGACTTTTTCCCAAAGCCTTGAACAATCCCTGCATCGTGCGCTGGCGATCGCAAACGAGCGTCATCACCAATACGC
GACGCTCGAGCATCTCTTGCTCTCCCTGATCGACGACTCCGATGCAGCCGCCGTCATGCGCGCCTGTAGCGTCGATCTCG
ACAAGCTCCGCACGAGCCTCGTCAATTATCTTGAGACCGAATTCGAGAATCTGGTGACGGATGGCGCCGACGACGCCAAG
CCGACCGCCGGTTTCCAGCGCGTGATCCAGCGCGCGGTGATCCACGTGCAGTCGTCGGGCCGCGAAGAGGTGACCGGCGC
CAACGTGCTGATCGCGATCTTCGCCGAACGCGAGAGCCATGCCGCGTATTTCCTGCAGGAGCAGGACATGACGCGCTATG
ACGCCGTCAACTACATCAGCCACGGCATCGCCAAGCGGCCGGGCGTCTCCGAGGCGCGGCCGGTGCGCGGCGTCGACGAG
GAGACCGAGGCAAAGGGTACCGAGGACGCCAAGAAGAAGGGCGAAGCGCTCGAGACCTATTGCGTCAACCTCAACAAGAA
GGCGCGCGACGGCAAGATCGATCCGGTGATCGGACGCAATTCCGAGATCAACCGCGCGATCCAGGTGCTGTGCCGCCGCC
AGAAGAACAACCCGCTGTTCGTCGGCGAAGCCGGCGTTGGCAAGACCGCGATCGCGGAGGGCCTCGCCAAGCGGATCGTC
GACAGCGAGGTGCCGGAGGTTCTCGCGGCTGCGACCGTGTTCTCGCTCGACATGGGCACGCTGCTCGCGGGCACGCGCTA
TCGCGGCGACTTCGAGGAGCGCCTGAAGCAGGTGCTGAAGGAGCTCGAAGCGCATCCCAACGCCATCCTGTTCATCGACG
AGATCCACACCGTGATCGGTGCGGGCGCGACGTCGGGCGGGGCGATGGATGCGTCGAACCTGCTCAAGCCGGCGCTTGCC
TCGGGCACGATCCGCTGCATGGGCTCGACCACCTACAAGGAATACCGCCAGCACTTCGAGAAGGACCGCGCGCTGGTGCG
GCGCTTCCAGAAGATCGACATCAACGAGCCGACGGTCGAGGACGCGATCGCGATCCTCAAGGGTCTCAAGCCTTACTTTG
AGGACTACCATCGGCTGAAGTACACCAACGAGGCGATCGAGGCGGCGGTGCAGCTCTCCTCGCGCTACATCCATGACCGC
AAGCTGCCCGACAAGGCGATCGACGTGATCGACGAGTCAGGTGCGGCGCAGATGCTGGTCGCCGAGAACAAGCGCAAGAA
GACCATCGGCATCAAGGAGATCGAGACCACGATCGCGTCGATGGCGCGGATCCCGCCGAAGAGCGTGTCGAAGGACGATG
CCGAGGTGCTCAAGCATCTCGAGCAGACCCTGAAGCGCACCGTGTTCGGTCAGGACAAGGCGATCGAGTCGCTCGCCGCA
TCGATCAAGCTGGCGCGTGCCGGCCTGCGCGAGCCGGAGAAGCCGATCGGCTGCTATTTGTTCTCGGGTCCGACCGGCGT
CGGCAAGACCGAGGTGGCAAAGCAGCTCGCGGCGTCGCTCGGCGTCGAGCTGTTGCGCTTCGACATGTCCGAATACATGG
AGCGGCACACCGTGTCGCGCCTGATCGGCGCGCCTCCCGGCTATGTCGGCTTCGACCAGGGCGGTCTGCTCACCGACGGC
GTCGACCAGCATCCGCATTGCGTCGTTCTGCTCGACGAAATCGAGAAGGCGCATCCCGACCTCTACAACGTGCTGCTCCA
GATCATGGATCACGGTCGGCTCACCGACCACAACGGCAAGCAGGTCAACTTCGGCAACGTGATCCTGATCATGACCACGA
ACGCGGGTGCTTCGGATCTCGCCAAGCAGGCGTTCGGCTTCACGCGCTCGAAGCGGGAAGGCGACGACCACGAGGCGATC
AACCGGCAGTTCGCGCCGGAATTCCGCAACCGTCTCGATGCCATCGTCTCGTTCGGCCATCTCAGCGTCGAGGTGATCGG
TACGGTCGTGGAGAAGTTCGTGCTGCAGCTCGAGGCTCAGCTCGGCGATCGCGACGTCACCATCGAACTGTCCGAACCCG
CCAAGAACTGGCTGGTCCAGCATGGTTACGACGAGCAGATGGGCGCACGGCCGATGGCCCGCGTCATCCAGGAGCACATC
AAGAAGCCGCTGGCTGACGAGGTGCTGTTCGGCAAGCTCAAGGGTGGCGGCCACGTCCGCGTCGTCCTGGTCAAGGACGA
GGCCGACGAGACCAAGGACAAGATCGGGTTCGAGTTCCTCGACGGTCCGATCACGCCGAAGCAGGAGAAGCTGCCCGGCG
CCCGCAAGCGTCCGCCGGGCAAGTCCAAGCCGGGCGGTGGCGGCTCCGGCGGCTCGAAGGGGCCGACCTCGAAGGGCCCG
CTGGTCAAGGCTTGA

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (15-64)

• ATPase family associated with various cellular activities (AAA) (AAA) (219-331)

• AAA lid domain (AAA_lid_9) (358-462)

• AAA domain (Cdc48 subfamily) (AAA_2) (495-655)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (661-741)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	38.882	100	0.389
clpA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	40.267	93.284	0.376
clpC	Streptococcus pneumoniae Rx1	37.376	100	0.376
clpC	Streptococcus pneumoniae D39	37.376	100	0.376
clpC	Streptococcus pneumoniae TIGR4	37.376	100	0.376
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	37.146	100	0.376
clpC	Streptococcus thermophilus LMD-9	36.667	100	0.369
clpC	Streptococcus thermophilus LMG 18311	36.667	100	0.369