Detailed information NTG0824318

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: R3F74_RS19735
• Genome accession: NZ_CP138298
• Coordinates: 4046345..4047616 (+)
• Length: 423 a.a.
• NCBI ID: WP_014494834.1
• Uniprot ID: A0ABY7MCD4
• Organism: Bradyrhizobium japonicum strain CNPSo 24
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 4041345..4052616

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R3F74_RS19710 (R3F74_19710)	-	4041359..4041793 (+)	435	WP_039147866.1	GNAT family N-acetyltransferase	-
R3F74_RS19715 (R3F74_19715)	-	4041821..4043173 (-)	1353	WP_039147868.1	multicopper oxidase family protein	-
R3F74_RS19725 (R3F74_19725)	tig	4043586..4044947 (+)	1362	WP_014494832.1	trigger factor	-
R3F74_RS19730 (R3F74_19730)	clpP	4045251..4045883 (+)	633	WP_014494833.1	ATP-dependent Clp protease proteolytic subunit	Regulator
R3F74_RS19735 (R3F74_19735)	clpX	4046345..4047616 (+)	1272	WP_014494834.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
R3F74_RS19740 (R3F74_19740)	lon	4047941..4050364 (+)	2424	WP_014494835.1	endopeptidase La	-
R3F74_RS19745 (R3F74_19745)	-	4050434..4050837 (+)	404	Protein_3927	GFA family protein	-
R3F74_RS19755 (R3F74_19755)	-	4051241..4051432 (+)	192	WP_014494837.1	hypothetical protein	-
R3F74_RS19760 (R3F74_19760)	-	4051612..4052472 (+)	861	WP_039147870.1	class I SAM-dependent methyltransferase	-

Sequence

Protein

• Length: 423 a.a.
• Molecular weight: 46576.40 Da
• Isoelectric Point: 5.5461

>NTDB_id=824318 R3F74_RS19735 WP_014494834.1 4046345..4047616(+) (clpX) [Bradyrhizobium japonicum strain CNPSo 24]
MSKVGTSDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSLVKSRDGIPTPKEICKVLDDYVIGQ
SHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENI
ILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTT
NILFICGGAFAGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGLIPEFVGRLPVVATLEDLDETSLK
KILTEPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGARGLRSILEAILLETMFDLPGLEGVEEVVISREVV
EGTARPLYIYADRSDRAVENASA

Nucleotide

• Length: 1272 bp

>NTDB_id=824318 R3F74_RS19735 WP_014494834.1 4046345..4047616(+) (clpX) [Bradyrhizobium japonicum strain CNPSo 24]
ATGAGTAAGGTCGGCACGAGCGACTCCAAGAACACGCTGTATTGCTCGTTCTGCGGCAAGAGCCAGCACGAAGTCCGCAA
ACTGATCGCGGGTCCCACGGTCTTCATCTGCGACGAGTGCGTTGAGCTCTGCATGGACATCATCCGCGAGGAGAACAAAT
CCTCGCTCGTGAAGTCGCGCGACGGCATTCCGACGCCGAAGGAAATCTGCAAGGTCCTGGACGATTACGTCATCGGCCAG
AGCCATGCGAAGAAGGTCCTGTCGGTCGCGGTGCACAATCACTACAAGCGTCTCAACCACCAGACCAAGCACAACGACGT
CGAGCTCGCGAAGTCGAACATCCTGCTGATCGGTCCGACCGGTTCGGGCAAGACGCTGCTCGCGCAGACGCTCGCCCGCA
TCCTGGACGTGCCGTTCACGATGGCCGATGCGACGACCCTGACCGAAGCCGGCTATGTCGGCGAGGACGTCGAGAACATC
ATCCTGAAGCTGCTGCAGGCCGCCGACTACAATGTCGAGCGCGCCCAGCGCGGCATCGTCTACATCGACGAAATCGACAA
GATCAGCCGCAAGTCCGACAATCCCTCAATCACGCGCGACGTGTCGGGTGAGGGCGTGCAGCAGGCGTTGCTGAAGATCA
TGGAAGGCACGGTGGCTTCGGTCCCGCCGCAGGGCGGCCGCAAGCATCCGCAGCAGGAGTTCCTGCAGGTGGATACCACC
AACATCCTGTTCATCTGCGGCGGTGCGTTCGCCGGCCTCGAGAAGATCATCTCGGCGCGCGGGCGGTCGACCTCGATCGG
TTTCGCCGCCCAGGTGCTGGCGCCGGAGGATCGCCGTACCGGCGAGATCTTCCGTCACGTCGAGCCTGAGGACCTCCTGA
AGTACGGTCTCATCCCCGAATTCGTCGGCCGTCTGCCGGTCGTGGCGACGCTCGAGGATCTGGACGAGACCTCGCTGAAG
AAGATCCTCACCGAGCCGAAGAACGCGCTGGTGAAACAGTACCAGCGGCTGTTCGAGATGGAGAACATCGAGCTGACCTT
CGCCGACGAGGCGCTTGGCGCGGTCGCCCGCAAGGCGATCGAGCGCAAGACCGGCGCGCGTGGTCTGCGTTCGATCCTCG
AGGCGATCCTGCTCGAGACCATGTTCGACCTGCCGGGCCTGGAAGGTGTGGAAGAAGTCGTGATTTCGCGCGAAGTCGTG
GAAGGCACGGCCCGTCCGCTCTACATCTACGCTGATCGGTCCGATCGCGCCGTCGAGAACGCCAGCGCCTGA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (13-50)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (314-385)

• AAA domain (Cdc48 subfamily) (AAA_2) (111-307)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	61.728	95.745	0.591
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.062	95.745	0.527