Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   SC131_RS23065 Genome accession   NZ_CP138217
Coordinates   4728274..4729011 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 20Y000092     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4723274..4734011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC131_RS23035 (SC131_23015) yfiL 4723433..4723798 (-) 366 WP_001298694.1 DUF2799 domain-containing protein -
  SC131_RS23040 (SC131_23020) aroF 4724008..4725078 (+) 1071 WP_001168027.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  SC131_RS23045 (SC131_23025) tyrA 4725089..4726210 (+) 1122 WP_000225209.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  SC131_RS23050 (SC131_23030) pheA 4726253..4727413 (-) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  SC131_RS23055 (SC131_23035) pheL 4727512..4727559 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  SC131_RS23060 (SC131_23040) raiA 4727663..4728004 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  SC131_RS23065 (SC131_23045) comL 4728274..4729011 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  SC131_RS23070 (SC131_23050) rluD 4729146..4730126 (+) 981 WP_000079118.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  SC131_RS23075 (SC131_23055) yfiH 4730123..4730854 (+) 732 WP_000040136.1 purine nucleoside phosphorylase YfiH -
  SC131_RS23080 (SC131_23060) clpC 4730984..4733557 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=824207 SC131_RS23065 WP_000197686.1 4728274..4729011(-) (comL) [Escherichia coli strain 20Y000092]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=824207 SC131_RS23065 WP_000197686.1 4728274..4729011(-) (comL) [Escherichia coli strain 20Y000092]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAAGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376