Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HK937_RS05665 Genome accession   NZ_CP137883
Coordinates   1094742..1095290 (+) Length   182 a.a.
NCBI ID   WP_224385674.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain P4549     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1089742..1100290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK937_RS05630 (HK937_0005630) - 1089934..1090358 (+) 425 Protein_1089 GNAT family N-acetyltransferase -
  HK937_RS05635 (HK937_0005635) - 1090422..1091041 (+) 620 Protein_1090 NAD(P)H-dependent oxidoreductase -
  HK937_RS05640 (HK937_0005640) - 1091041..1091646 (+) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  HK937_RS05645 (HK937_0005645) pgsA 1091771..1092307 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HK937_RS05650 (HK937_0005650) rseP 1092304..1093410 (+) 1107 WP_224385673.1 RIP metalloprotease RseP -
  HK937_RS05655 (HK937_0005655) - 1093403..1094269 (+) 867 WP_057032903.1 VirK family antimicrobial peptide resistance protein -
  HK937_RS05660 (HK937_0005660) rpsF 1094356..1094733 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  HK937_RS05665 (HK937_0005665) ssb 1094742..1095290 (+) 549 WP_224385674.1 single-stranded DNA-binding protein Machinery gene
  HK937_RS05670 (HK937_0005670) rpsR 1095301..1095561 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  HK937_RS05675 (HK937_0005675) lon 1095621..1097996 (-) 2376 WP_002853487.1 endopeptidase La -
  HK937_RS05680 (HK937_0005680) - 1098013..1098660 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  HK937_RS05685 (HK937_0005685) fliW 1098821..1099210 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  HK937_RS05690 (HK937_0005690) proC 1099210..1099941 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  HK937_RS05695 (HK937_0005695) ctsT 1099938..1100240 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20626.52 Da        Isoelectric Point: 5.0431

>NTDB_id=824097 HK937_RS05665 WP_224385674.1 1094742..1095290(+) (ssb) [Campylobacter jejuni subsp. jejuni strain P4549]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNTPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=824097 HK937_RS05665 WP_224385674.1 1094742..1095290(+) (ssb) [Campylobacter jejuni subsp. jejuni strain P4549]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGCGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATACTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363