Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QFW95_RS08930 Genome accession   NZ_CP124219
Coordinates   1995948..1996583 (+) Length   211 a.a.
NCBI ID   WP_177513903.1    Uniprot ID   -
Organism   Pseudomonas sp. P13     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1990948..2001583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFW95_RS08910 - 1991134..1992066 (+) 933 WP_047228177.1 ABC transporter ATP-binding protein -
  QFW95_RS08915 - 1992063..1992842 (+) 780 WP_047228178.1 ABC transporter permease -
  QFW95_RS08920 - 1992944..1993459 (-) 516 WP_047228179.1 DUF2062 domain-containing protein -
  QFW95_RS08925 comA 1993605..1995845 (+) 2241 WP_281459942.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QFW95_RS08930 exbB 1995948..1996583 (+) 636 WP_177513903.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QFW95_RS08935 - 1996580..1997008 (+) 429 WP_047228182.1 biopolymer transporter ExbD -
  QFW95_RS08940 lpxK 1997008..1998018 (+) 1011 WP_281459943.1 tetraacyldisaccharide 4'-kinase -
  QFW95_RS08945 - 1998042..1998227 (+) 186 WP_003179363.1 Trm112 family protein -
  QFW95_RS08950 kdsB 1998224..1998988 (+) 765 WP_047228184.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QFW95_RS08955 - 1998988..1999452 (+) 465 WP_047228185.1 low molecular weight protein-tyrosine-phosphatase -
  QFW95_RS08960 murB 1999449..2000468 (+) 1020 WP_047228186.1 UDP-N-acetylmuramate dehydrogenase -
  QFW95_RS08965 - 2000725..2001195 (+) 471 WP_047228187.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22939.12 Da        Isoelectric Point: 8.0841

>NTDB_id=823969 QFW95_RS08930 WP_177513903.1 1995948..1996583(+) (exbB) [Pseudomonas sp. P13]
MWELVKSGGWMMLPIILSSIVALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKKLNKDRLKELRASSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFTGAGMTANASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=823969 QFW95_RS08930 WP_177513903.1 1995948..1996583(+) (exbB) [Pseudomonas sp. P13]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGTGGCGCTGGGAATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATTTGCTCGGGCAAGTCTGGGTCTGGATCAAGGACA
AGAAACTGAACAAGGACCGGCTCAAGGAGCTGCGGGCCAGTTCACCGTTGGGTGAAATTCTTGCCGCGGGGCTGGCAAAT
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCCCGGGTCATCCATGAGCTGGAACGCTACAT
CAATGCCCTGGGCACAATTGCCGCCATGGCTCCGTTGCTGGGCCTGCTGGGCACGGTGCTGGGCATGATCGACATTTTCA
GTTCGTTCACCGGCGCCGGCATGACCGCCAATGCCTCGGTGCTGGCAGGGGGGATTTCCAAGGCCTTGATCACCACGGCC
GCCGGGTTGATGGTGGGGATTCCTTCGGTGTTTTTCCATCGCTTCCTGCAACGGCGCATCGATGAGTTGGTGGTGGGCAT
GGAGCAGGAGGCCATCAAGCTGGTCGAGGTGGTGCAAGGCGACCGTGACGTGGACCTGGCCGAGGGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.286

99.526

0.839