Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   QFW95_RS08925 Genome accession   NZ_CP124219
Coordinates   1993605..1995845 (+) Length   746 a.a.
NCBI ID   WP_281459942.1    Uniprot ID   -
Organism   Pseudomonas sp. P13     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1988605..2000845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFW95_RS08900 - 1989672..1990331 (+) 660 WP_076383822.1 transglutaminase family protein -
  QFW95_RS08905 - 1990377..1991000 (+) 624 WP_047228176.1 glutathione S-transferase -
  QFW95_RS08910 - 1991134..1992066 (+) 933 WP_047228177.1 ABC transporter ATP-binding protein -
  QFW95_RS08915 - 1992063..1992842 (+) 780 WP_047228178.1 ABC transporter permease -
  QFW95_RS08920 - 1992944..1993459 (-) 516 WP_047228179.1 DUF2062 domain-containing protein -
  QFW95_RS08925 comA 1993605..1995845 (+) 2241 WP_281459942.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QFW95_RS08930 exbB 1995948..1996583 (+) 636 WP_177513903.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QFW95_RS08935 - 1996580..1997008 (+) 429 WP_047228182.1 biopolymer transporter ExbD -
  QFW95_RS08940 lpxK 1997008..1998018 (+) 1011 WP_281459943.1 tetraacyldisaccharide 4'-kinase -
  QFW95_RS08945 - 1998042..1998227 (+) 186 WP_003179363.1 Trm112 family protein -
  QFW95_RS08950 kdsB 1998224..1998988 (+) 765 WP_047228184.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QFW95_RS08955 - 1998988..1999452 (+) 465 WP_047228185.1 low molecular weight protein-tyrosine-phosphatase -
  QFW95_RS08960 murB 1999449..2000468 (+) 1020 WP_047228186.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 746 a.a.        Molecular weight: 80942.05 Da        Isoelectric Point: 9.5572

>NTDB_id=823968 QFW95_RS08925 WP_281459942.1 1993605..1995845(+) (comA) [Pseudomonas sp. P13]
MRTGMVALALGLLTPVFCPALPPLWLIAVMPVLALMVLPFRTHPLGFFLIGLAWACLSAQLALDDRLPAALDGETRWLEG
RVVGLPQYNEGVVRFELADAHSRRTRLPSSMRLAWFGGPPVSSGERWRLAVKLKRPTGLLNPHGFDYQAWLLSRGIGATG
TVKDGHLQQPAQGAWRDGVRQALAQVDAQGRSGALAALVLGDGAGLSRDDWQVLQDTGTVHLLVISGQHIGLLAALVYLL
VAGAARYGMWPVRLPWLPWACALAFIAALGYGLLAGFEVPVRRACAMIGLVLLWRLRYRHPDPWWAWLLAFNGVLAFDPL
ASLRPGFWLSFAAVAILMFTFGARLGSWRWWQTWTRAQWLVAVGLCPILLILGLPISLSGPLVNLVAVPWVSLLVLPPAL
LGTALLPMPFVGEGLLWIAGGLLDLLFKGLALVAGRIPAWVPAAIPLWVWCMAALGALLLLLPKGVPLRVLGWPMVLLVV
FPPREDVPPGQAEIWQLDVGQGLAVLVRTRHHALLYDAGPRFGEADAGERVVLPTLRKLGVAGLDLMLLSHADADHAGGA
QAVRNGLPTVRVVSGDPAALPAALQAEACDSGARWEWDGVRFELWQWSSALESNQRSCVLLVEAGDERLLLTGDIDSHAE
HALLDGPLAVPVQWLAAPHHGSRSSSSMLLLSRLKPHSVLISRGQGNAFGHPHPRVLARYRRLGMAIYDSAEQGAIRLQL
GAFEAPRLQAGQRRYWRDPPSAGPWP

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=823968 QFW95_RS08925 WP_281459942.1 1993605..1995845(+) (comA) [Pseudomonas sp. P13]
ATGCGCACAGGGATGGTCGCGCTTGCACTCGGGCTGCTGACCCCGGTTTTTTGCCCGGCGCTGCCGCCGCTGTGGCTGAT
TGCGGTCATGCCTGTGCTGGCGCTGATGGTTTTGCCGTTTCGAACTCATCCGCTGGGTTTTTTCCTGATCGGGCTGGCTT
GGGCGTGTCTGTCGGCGCAACTGGCCCTGGACGATCGGTTGCCTGCCGCGCTGGATGGAGAAACCCGCTGGCTCGAAGGG
CGCGTCGTCGGTTTACCGCAATATAACGAAGGTGTGGTGCGCTTTGAACTGGCCGATGCCCATTCCCGCCGCACACGGCT
GCCGTCGTCGATGCGCCTGGCCTGGTTCGGTGGACCGCCTGTGAGCAGCGGCGAACGTTGGCGATTGGCGGTAAAGCTCA
AACGCCCCACCGGGCTACTGAACCCCCATGGCTTCGATTACCAGGCCTGGCTGTTGAGCCGCGGCATCGGCGCGACTGGC
ACGGTCAAGGACGGTCATCTCCAGCAACCTGCCCAAGGTGCCTGGCGCGACGGCGTGCGTCAGGCGCTGGCGCAAGTCGA
CGCCCAGGGCCGCTCCGGGGCGCTGGCGGCATTGGTCCTGGGGGACGGAGCTGGGCTGAGTCGTGATGACTGGCAGGTAC
TGCAGGACACCGGTACGGTCCATCTGCTGGTGATCTCCGGGCAGCACATCGGCCTGCTTGCCGCACTGGTGTACCTGCTG
GTGGCCGGTGCGGCGCGTTATGGCATGTGGCCGGTGCGTCTGCCGTGGCTACCTTGGGCCTGCGCGCTGGCCTTTATCGC
AGCCTTGGGTTACGGCTTGCTCGCCGGCTTCGAGGTGCCGGTGCGGCGCGCCTGCGCGATGATCGGCCTGGTGTTGCTGT
GGCGTTTGCGTTACCGGCATCCGGACCCCTGGTGGGCGTGGCTGCTGGCTTTCAATGGGGTGCTGGCGTTCGATCCATTG
GCCAGTCTGCGGCCGGGGTTCTGGCTGTCGTTCGCCGCGGTGGCGATCCTGATGTTTACTTTCGGCGCACGCTTGGGGTC
CTGGCGCTGGTGGCAAACCTGGACCCGTGCCCAATGGCTGGTGGCAGTCGGACTGTGCCCGATCCTGTTGATATTGGGTT
TGCCGATCAGCCTCAGCGGGCCTCTGGTGAACCTGGTGGCGGTGCCTTGGGTCAGCCTGCTGGTGTTGCCGCCGGCGCTG
CTCGGTACGGCGTTGTTGCCGATGCCGTTCGTGGGTGAAGGGCTGCTTTGGATCGCCGGCGGGTTGCTCGATCTGCTCTT
CAAGGGGCTGGCGCTGGTGGCCGGTCGAATACCGGCATGGGTGCCTGCGGCTATCCCCCTGTGGGTGTGGTGCATGGCCG
CTCTGGGGGCTTTGTTACTGTTGCTGCCCAAAGGCGTGCCACTGCGGGTACTGGGATGGCCCATGGTGCTGCTGGTGGTT
TTCCCTCCGAGGGAGGATGTGCCCCCGGGGCAAGCCGAAATCTGGCAACTGGACGTGGGCCAAGGGTTGGCGGTGCTGGT
ACGCACCCGTCATCATGCCTTGCTTTACGACGCGGGGCCGCGCTTTGGCGAGGCCGACGCGGGTGAGCGCGTGGTGCTGC
CGACCCTGCGCAAGCTGGGCGTCGCCGGGTTGGACCTGATGCTGCTCAGCCATGCCGACGCCGATCACGCCGGCGGCGCC
CAAGCGGTGCGCAATGGCTTGCCAACGGTCCGGGTGGTCAGTGGCGACCCCGCCGCGTTGCCTGCCGCTTTGCAGGCAGA
GGCGTGCGACAGTGGCGCGCGCTGGGAGTGGGACGGGGTCAGGTTCGAGCTGTGGCAATGGTCATCTGCCCTTGAAAGCA
ACCAGAGATCCTGCGTTCTGCTGGTCGAGGCTGGCGATGAGCGGTTGTTGCTCACCGGCGACATCGATAGCCATGCCGAG
CACGCGTTGCTCGACGGGCCTCTGGCCGTGCCGGTCCAGTGGCTGGCGGCGCCCCATCACGGTAGCCGCAGTTCATCCTC
GATGTTGCTGTTGTCGCGGCTCAAACCCCATTCGGTGTTGATCTCCCGCGGCCAGGGCAATGCGTTCGGCCATCCTCATC
CGCGGGTGCTGGCTCGCTATCGCCGCTTGGGCATGGCGATCTACGACAGTGCCGAACAGGGTGCCATTCGTCTGCAACTG
GGGGCTTTCGAAGCACCGCGCCTTCAGGCCGGCCAACGGCGCTACTGGCGCGACCCGCCGTCTGCGGGACCATGGCCGTA
A

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-667)

Domain of unknown function (DUF4131) (DUF4131)

(22-165)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.034

95.979

0.586