Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   R7234_RS06870 Genome accession   NZ_CP137737
Coordinates   1339257..1339994 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain HNSQ2209     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1334257..1344994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R7234_RS28920 - 1335434..1335526 (-) 93 Protein_1335 hypothetical protein -
  R7234_RS06835 (R7234_06835) - 1335487..1336287 (+) 801 WP_244448995.1 contractile injection system protein, VgrG/Pvc8 family -
  R7234_RS06840 (R7234_06840) - 1336330..1336590 (+) 261 WP_000488103.1 ogr/Delta-like zinc finger family protein -
  R7234_RS06845 (R7234_06845) - 1336781..1336921 (+) 141 WP_000078916.1 Hok/Gef family protein -
  R7234_RS06850 (R7234_06850) - 1337057..1337353 (+) 297 WP_001519189.1 TM2 domain-containing protein -
  R7234_RS06855 (R7234_06855) - 1337546..1337743 (+) 198 WP_063100490.1 Com family DNA-binding transcriptional regulator -
  R7234_RS06860 (R7234_06860) - 1337688..1338494 (+) 807 WP_063100489.1 DNA-methyltransferase -
  R7234_RS06865 (R7234_06865) raiA 1338645..1338986 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  R7234_RS06870 (R7234_06870) comL 1339257..1339994 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  R7234_RS06875 (R7234_06875) rluD 1340129..1341109 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  R7234_RS06880 (R7234_06880) yfiH 1341106..1341837 (+) 732 WP_001752929.1 purine nucleoside phosphorylase YfiH -
  R7234_RS06885 (R7234_06885) clpC 1341967..1344540 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=823939 R7234_RS06870 WP_000197686.1 1339257..1339994(-) (comL) [Escherichia coli strain HNSQ2209]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=823939 R7234_RS06870 WP_000197686.1 1339257..1339994(-) (comL) [Escherichia coli strain HNSQ2209]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376