Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   QEZ42_RS08985 Genome accession   NZ_CP124202
Coordinates   1765279..1765611 (+) Length   110 a.a.
NCBI ID   WP_012295159.1    Uniprot ID   -
Organism   Lysinibacillus sphaericus strain FY22.JlqLf     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1760279..1770611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEZ42_RS08955 - 1760751..1760930 (-) 180 WP_031416957.1 DUF2759 domain-containing protein -
  QEZ42_RS08960 - 1761099..1761743 (+) 645 WP_012295163.1 MBL fold metallo-hydrolase -
  QEZ42_RS08965 - 1761803..1762045 (-) 243 WP_004231035.1 DUF2626 family protein -
  QEZ42_RS08970 - 1762163..1762873 (-) 711 WP_012295162.1 helix-turn-helix domain-containing protein -
  QEZ42_RS08975 comGA 1763201..1764220 (+) 1020 WP_012295161.1 competence type IV pilus ATPase ComGA -
  QEZ42_RS08980 comGB 1764195..1765268 (+) 1074 WP_012295160.1 competence type IV pilus assembly protein ComGB -
  QEZ42_RS08985 comGC 1765279..1765611 (+) 333 WP_012295159.1 competence type IV pilus major pilin ComGC Machinery gene
  QEZ42_RS08990 comGD 1765611..1766051 (+) 441 WP_031416951.1 competence type IV pilus minor pilin ComGD -
  QEZ42_RS08995 - 1766044..1766361 (+) 318 WP_012295157.1 hypothetical protein -
  QEZ42_RS09000 comGF 1766354..1766782 (+) 429 WP_012295156.1 competence type IV pilus minor pilin ComGF -
  QEZ42_RS09005 - 1766981..1767496 (+) 516 WP_031416947.1 shikimate kinase -
  QEZ42_RS09010 gcvT 1768000..1769103 (+) 1104 WP_031416946.1 glycine cleavage system aminomethyltransferase GcvT -
  QEZ42_RS09015 gcvPA 1769129..1770475 (+) 1347 WP_012295153.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 110 a.a.        Molecular weight: 12302.40 Da        Isoelectric Point: 4.6258

>NTDB_id=823907 QEZ42_RS08985 WP_012295159.1 1765279..1765611(+) (comGC) [Lysinibacillus sphaericus strain FY22.JlqLf]
MKQIKQQNGFTLIEMLIVLLIISILILITIPNVTKHFATIDEKGCAAYINMVQGQVEAYRVDFMTFPTLEDLVKEGYLKE
NETTCPNKEEIVITIKGEVRLANADAGTQG

Nucleotide


Download         Length: 333 bp        

>NTDB_id=823907 QEZ42_RS08985 WP_012295159.1 1765279..1765611(+) (comGC) [Lysinibacillus sphaericus strain FY22.JlqLf]
ATGAAACAAATCAAACAACAAAATGGCTTTACTTTAATCGAAATGCTGATTGTTTTGTTAATTATATCAATCCTTATTTT
AATTACAATTCCAAATGTTACGAAGCACTTTGCTACGATTGATGAGAAGGGCTGTGCGGCCTATATTAATATGGTGCAGG
GGCAAGTAGAGGCCTATAGAGTGGATTTTATGACATTTCCGACCCTTGAGGATTTAGTGAAGGAGGGCTATTTGAAAGAA
AATGAAACAACTTGCCCTAATAAAGAAGAAATAGTCATTACGATTAAAGGAGAGGTACGCTTAGCAAATGCTGATGCAGG
TACTCAAGGATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

54.082

89.091

0.482
  comGC Staphylococcus aureus MW2

45.263

86.364

0.391
  comGC Staphylococcus aureus N315

45.263

86.364

0.391