Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QEZ42_RS06990 | Genome accession | NZ_CP124202 |
| Coordinates | 1376261..1376767 (+) | Length | 168 a.a. |
| NCBI ID | WP_281486960.1 | Uniprot ID | - |
| Organism | Lysinibacillus sphaericus strain FY22.JlqLf | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1367525..1416330 | 1376261..1376767 | within | 0 |
Gene organization within MGE regions
Location: 1367525..1416330
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QEZ42_RS06915 | - | 1367525..1368640 (-) | 1116 | WP_281486946.1 | tyrosine-type recombinase/integrase | - |
| QEZ42_RS06920 | - | 1368703..1369749 (-) | 1047 | WP_281486947.1 | ImmA/IrrE family metallo-endopeptidase | - |
| QEZ42_RS06925 | - | 1369724..1370074 (-) | 351 | WP_281486948.1 | helix-turn-helix transcriptional regulator | - |
| QEZ42_RS06930 | - | 1370378..1370569 (+) | 192 | WP_281486949.1 | hypothetical protein | - |
| QEZ42_RS06935 | - | 1370602..1371366 (+) | 765 | WP_281486950.1 | Bro-N domain-containing protein | - |
| QEZ42_RS06940 | - | 1371367..1371684 (+) | 318 | WP_281486951.1 | DUF771 domain-containing protein | - |
| QEZ42_RS06945 | - | 1371834..1372220 (+) | 387 | WP_281486952.1 | hypothetical protein | - |
| QEZ42_RS06950 | - | 1372204..1372356 (+) | 153 | WP_281486953.1 | hypothetical protein | - |
| QEZ42_RS06955 | - | 1372371..1372541 (+) | 171 | WP_281486954.1 | hypothetical protein | - |
| QEZ42_RS06960 | - | 1372605..1373234 (+) | 630 | WP_281486955.1 | ERF family protein | - |
| QEZ42_RS06965 | - | 1373246..1374091 (+) | 846 | WP_281486956.1 | phage replisome organizer N-terminal domain-containing protein | - |
| QEZ42_RS06970 | - | 1374091..1375326 (+) | 1236 | WP_281486957.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| QEZ42_RS06975 | - | 1375313..1375747 (+) | 435 | WP_281486958.1 | hypothetical protein | - |
| QEZ42_RS06980 | - | 1375754..1375909 (+) | 156 | WP_164908755.1 | hypothetical protein | - |
| QEZ42_RS06985 | - | 1375896..1376264 (+) | 369 | WP_281486959.1 | YopX family protein | - |
| QEZ42_RS06990 | ssbA | 1376261..1376767 (+) | 507 | WP_281486960.1 | single-stranded DNA-binding protein | Machinery gene |
| QEZ42_RS06995 | - | 1376785..1377246 (+) | 462 | WP_281486961.1 | RusA family crossover junction endodeoxyribonuclease | - |
| QEZ42_RS07000 | - | 1377264..1377680 (+) | 417 | WP_281486962.1 | hypothetical protein | - |
| QEZ42_RS07005 | - | 1377743..1378981 (+) | 1239 | WP_281486963.1 | DNA cytosine methyltransferase | - |
| QEZ42_RS07010 | - | 1379013..1379429 (+) | 417 | WP_281486964.1 | transcriptional regulator | - |
| QEZ42_RS07015 | - | 1379466..1379822 (+) | 357 | WP_281486965.1 | hypothetical protein | - |
| QEZ42_RS07020 | - | 1380096..1381229 (+) | 1134 | WP_281486966.1 | ATP-binding protein | - |
| QEZ42_RS07025 | - | 1381226..1381990 (+) | 765 | WP_281486967.1 | DUF3226 domain-containing protein | - |
| QEZ42_RS07030 | - | 1382125..1382676 (+) | 552 | WP_281486968.1 | hypothetical protein | - |
| QEZ42_RS07035 | - | 1382791..1383045 (+) | 255 | WP_281486969.1 | hypothetical protein | - |
| QEZ42_RS07040 | - | 1383121..1383333 (+) | 213 | WP_281486970.1 | hypothetical protein | - |
| QEZ42_RS07045 | - | 1383542..1385014 (+) | 1473 | WP_281486971.1 | hypothetical protein | - |
| QEZ42_RS07050 | - | 1385257..1385523 (+) | 267 | WP_281486972.1 | hypothetical protein | - |
| QEZ42_RS07055 | - | 1385525..1385842 (+) | 318 | WP_281486973.1 | hypothetical protein | - |
| QEZ42_RS07060 | - | 1385832..1386212 (+) | 381 | WP_281486974.1 | HNH endonuclease | - |
| QEZ42_RS07065 | - | 1386342..1386860 (+) | 519 | WP_281486975.1 | phage terminase small subunit P27 family | - |
| QEZ42_RS07070 | - | 1386857..1388560 (+) | 1704 | WP_281486976.1 | terminase TerL endonuclease subunit | - |
| QEZ42_RS07075 | - | 1388612..1389814 (+) | 1203 | WP_281487128.1 | phage portal protein | - |
| QEZ42_RS07080 | - | 1389840..1390559 (+) | 720 | WP_281487129.1 | head maturation protease, ClpP-related | - |
| QEZ42_RS07085 | - | 1390626..1391816 (+) | 1191 | WP_281487130.1 | phage major capsid protein | - |
| QEZ42_RS07090 | - | 1391860..1392093 (+) | 234 | WP_281486977.1 | hypothetical protein | - |
| QEZ42_RS07095 | - | 1392093..1392425 (+) | 333 | WP_281486978.1 | head-tail connector protein | - |
| QEZ42_RS07100 | - | 1392403..1392738 (+) | 336 | WP_281486979.1 | phage head closure protein | - |
| QEZ42_RS07105 | - | 1392739..1393158 (+) | 420 | WP_281486980.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| QEZ42_RS07110 | - | 1393155..1393499 (+) | 345 | WP_281486981.1 | hypothetical protein | - |
| QEZ42_RS07115 | - | 1393519..1394103 (+) | 585 | WP_281486982.1 | major tail protein | - |
| QEZ42_RS07120 | - | 1394176..1394481 (+) | 306 | WP_281486983.1 | hypothetical protein | - |
| QEZ42_RS07125 | - | 1394685..1399661 (+) | 4977 | WP_281486984.1 | phage tail tape measure protein | - |
| QEZ42_RS07130 | - | 1399666..1400556 (+) | 891 | WP_281486985.1 | phage tail domain-containing protein | - |
| QEZ42_RS07135 | - | 1400559..1401671 (+) | 1113 | WP_281486986.1 | siphovirus ReqiPepy6 Gp37-like family protein | - |
| QEZ42_RS07140 | - | 1401671..1403224 (+) | 1554 | WP_281486987.1 | hypothetical protein | - |
| QEZ42_RS07145 | - | 1403244..1403558 (+) | 315 | WP_281486988.1 | hypothetical protein | - |
| QEZ42_RS07150 | - | 1403940..1404239 (+) | 300 | WP_237497350.1 | hypothetical protein | - |
| QEZ42_RS07155 | - | 1404229..1404489 (+) | 261 | WP_089987110.1 | phage holin | - |
| QEZ42_RS07160 | - | 1404486..1405154 (+) | 669 | WP_281486989.1 | M15 family metallopeptidase | - |
| QEZ42_RS07165 | - | 1405417..1406253 (+) | 837 | WP_281486990.1 | discoidin domain-containing protein | - |
| QEZ42_RS07170 | - | 1406387..1406743 (+) | 357 | WP_281486991.1 | aconitate hydratase | - |
| QEZ42_RS07175 | - | 1406770..1407186 (-) | 417 | WP_281486992.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| QEZ42_RS07180 | - | 1407213..1407404 (-) | 192 | WP_196243961.1 | type II toxin-antitoxin system HicA family toxin | - |
| QEZ42_RS07185 | - | 1407539..1408279 (-) | 741 | WP_036167096.1 | FxLYD domain-containing protein | - |
| QEZ42_RS07190 | - | 1408356..1408577 (-) | 222 | WP_036167099.1 | helix-turn-helix transcriptional regulator | - |
| QEZ42_RS07195 | - | 1408764..1409597 (+) | 834 | WP_281486993.1 | helix-turn-helix domain-containing protein | - |
| QEZ42_RS07200 | - | 1409700..1410452 (+) | 753 | WP_281486994.1 | hypothetical protein | - |
| QEZ42_RS07205 | - | 1410909..1411250 (-) | 342 | WP_281486995.1 | tyrosine-type recombinase/integrase | - |
| QEZ42_RS07210 | - | 1411270..1411371 (-) | 102 | Protein_1333 | IS3 family transposase | - |
| QEZ42_RS07215 | - | 1411584..1412030 (+) | 447 | Protein_1334 | N-acetylmuramoyl-L-alanine amidase | - |
| QEZ42_RS07220 | - | 1412420..1413100 (+) | 681 | WP_031419361.1 | hypothetical protein | - |
| QEZ42_RS07225 | - | 1413575..1413840 (-) | 266 | Protein_1336 | IS3 family transposase | - |
| QEZ42_RS07230 | - | 1414938..1415336 (+) | 399 | WP_281486996.1 | hypothetical protein | - |
| QEZ42_RS07235 | - | 1415644..1416330 (+) | 687 | WP_012295540.1 | DUF421 domain-containing protein | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18622.38 Da Isoelectric Point: 5.8182
>NTDB_id=823902 QEZ42_RS06990 WP_281486960.1 1376261..1376767(+) (ssbA) [Lysinibacillus sphaericus strain FY22.JlqLf]
MINRVVLVGRLTKDPELRYTPNGIASCRFTLAVNRAFKSEGEQQADFIQCVAWRKQAENLANFQRKGNLIGVEGRIQTGS
YESQDGKRVYTTDVVADSIQFLEHKNGSESAQNDSNARSDTNRGVGSQNGSEGHRGPQNTQPNYTRVDEDPFANSKGPGE
VKEEDLPF
MINRVVLVGRLTKDPELRYTPNGIASCRFTLAVNRAFKSEGEQQADFIQCVAWRKQAENLANFQRKGNLIGVEGRIQTGS
YESQDGKRVYTTDVVADSIQFLEHKNGSESAQNDSNARSDTNRGVGSQNGSEGHRGPQNTQPNYTRVDEDPFANSKGPGE
VKEEDLPF
Nucleotide
Download Length: 507 bp
>NTDB_id=823902 QEZ42_RS06990 WP_281486960.1 1376261..1376767(+) (ssbA) [Lysinibacillus sphaericus strain FY22.JlqLf]
ATGATTAACCGCGTTGTACTAGTTGGCCGTTTAACTAAAGATCCTGAATTACGCTACACACCAAATGGCATTGCATCATG
TCGCTTCACATTAGCTGTTAATCGTGCTTTCAAAAGTGAAGGTGAACAGCAAGCCGATTTTATCCAGTGTGTTGCTTGGA
GAAAACAGGCTGAGAATCTAGCAAACTTTCAGCGAAAAGGTAATTTAATAGGCGTTGAGGGCCGTATTCAAACAGGAAGT
TATGAAAGTCAGGATGGCAAGCGTGTGTACACGACAGACGTTGTAGCCGATAGCATTCAATTCTTAGAGCATAAAAACGG
CTCAGAAAGCGCTCAGAACGATTCGAACGCACGTTCTGATACAAATAGAGGGGTAGGTTCTCAAAACGGCTCAGAAGGTC
ACAGAGGGCCTCAAAACACACAGCCAAATTATACAAGGGTAGACGAAGATCCATTTGCAAATAGCAAAGGCCCTGGTGAA
GTAAAAGAAGAAGATCTTCCATTCTGA
ATGATTAACCGCGTTGTACTAGTTGGCCGTTTAACTAAAGATCCTGAATTACGCTACACACCAAATGGCATTGCATCATG
TCGCTTCACATTAGCTGTTAATCGTGCTTTCAAAAGTGAAGGTGAACAGCAAGCCGATTTTATCCAGTGTGTTGCTTGGA
GAAAACAGGCTGAGAATCTAGCAAACTTTCAGCGAAAAGGTAATTTAATAGGCGTTGAGGGCCGTATTCAAACAGGAAGT
TATGAAAGTCAGGATGGCAAGCGTGTGTACACGACAGACGTTGTAGCCGATAGCATTCAATTCTTAGAGCATAAAAACGG
CTCAGAAAGCGCTCAGAACGATTCGAACGCACGTTCTGATACAAATAGAGGGGTAGGTTCTCAAAACGGCTCAGAAGGTC
ACAGAGGGCCTCAAAACACACAGCCAAATTATACAAGGGTAGACGAAGATCCATTTGCAAATAGCAAAGGCCCTGGTGAA
GTAAAAGAAGAAGATCTTCCATTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
49.444 |
100 |
0.53 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
48.837 |
100 |
0.5 |