Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QEZ42_RS00630 Genome accession   NZ_CP124202
Coordinates   125276..125845 (+) Length   189 a.a.
NCBI ID   WP_036163682.1    Uniprot ID   -
Organism   Lysinibacillus sphaericus strain FY22.JlqLf     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 120276..130845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEZ42_RS00595 - 120738..121610 (+) 873 WP_031415837.1 mechanosensitive ion channel family protein -
  QEZ42_RS00600 - 121612..121812 (+) 201 WP_012296216.1 DUF951 domain-containing protein -
  QEZ42_RS00605 ychF 121909..123009 (+) 1101 WP_012296215.1 redox-regulated ATPase YchF -
  QEZ42_RS00610 - 123092..123733 (+) 642 WP_281486799.1 hypothetical protein -
  QEZ42_RS00615 - 123758..124132 (+) 375 Protein_106 acyl-CoA dehydrogenase -
  QEZ42_RS00620 - 124196..124762 (-) 567 WP_012296213.1 DUF3267 domain-containing protein -
  QEZ42_RS00625 rpsF 124941..125228 (+) 288 WP_031415833.1 30S ribosomal protein S6 -
  QEZ42_RS00630 ssbA 125276..125845 (+) 570 WP_036163682.1 single-stranded DNA-binding protein Machinery gene
  QEZ42_RS00635 rpsR 125887..126123 (+) 237 WP_012296211.1 30S ribosomal protein S18 -
  QEZ42_RS00640 - 126349..127290 (+) 942 WP_031415831.1 YybS family protein -
  QEZ42_RS00645 - 127304..129274 (+) 1971 WP_036162492.1 DHH family phosphoesterase -
  QEZ42_RS00650 rplI 129274..129720 (+) 447 WP_012296208.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20619.61 Da        Isoelectric Point: 4.7719

>NTDB_id=823892 QEZ42_RS00630 WP_036163682.1 125276..125845(+) (ssbA) [Lysinibacillus sphaericus strain FY22.JlqLf]
MINRVVLVGRLTKDPELRYTPNGIASTRFTVAVNRAFSNQQGEREADFINCVAWRKQAENLANFMRKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRNGSSAPAPQYGGGQTYGNNQPSYGGGQPQQQFGGAMPGQGSYGGDAYQQNQPPM
NQPNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=823892 QEZ42_RS00630 WP_036163682.1 125276..125845(+) (ssbA) [Lysinibacillus sphaericus strain FY22.JlqLf]
ATGATAAACCGTGTCGTATTAGTTGGAAGACTAACAAAAGATCCTGAGCTACGTTATACACCAAATGGAATTGCGTCTAC
AAGATTTACAGTTGCTGTGAATCGTGCATTCTCAAATCAACAAGGTGAACGTGAAGCTGATTTCATTAACTGTGTTGCAT
GGCGAAAACAGGCTGAAAACCTAGCGAACTTCATGCGAAAAGGAAGTTTAATTGGGGTAGAAGGTCGTATCCAAACAGGC
AGTTATGAAGGACAAGACGGTAAGCGAGTATATACAACAGACGTTGTGGCGGATAGCGTACAGTTTTTAGAACCACGTAA
TGGTAGCAGTGCTCCTGCTCCTCAATACGGTGGTGGACAAACTTACGGTAATAACCAACCGTCCTATGGCGGTGGTCAAC
CACAGCAGCAGTTTGGTGGCGCTATGCCAGGACAGGGTTCCTATGGCGGCGATGCTTATCAGCAAAATCAACCACCTATG
AATCAGCCAAACTATACACGTGTAGATGAGGACCCATTTGCTAATAGCAAGGGACCGATAGAAGTATCTGAGGATGATCT
TCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.968

100

0.54
  ssb Latilactobacillus sakei subsp. sakei 23K

48.677

100

0.487