Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   R8625_RS00195 Genome accession   NZ_AP026923
Coordinates   36238..37008 (+) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae strain PZ900700054     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 31238..42008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8625_RS00175 (PC0054_00290) - 33246..33683 (+) 438 WP_050198148.1 CoA-binding protein -
  R8625_RS00180 - 33724..33894 (+) 171 WP_041852864.1 hypothetical protein -
  R8625_RS00185 (PC0054_00300) - 33913..34923 (-) 1011 WP_050204489.1 YeiH family protein -
  R8625_RS00190 (PC0054_00310) - 35072..36241 (+) 1170 WP_000366351.1 pyridoxal phosphate-dependent aminotransferase -
  R8625_RS00195 (PC0054_00320) recO 36238..37008 (+) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  R8625_RS00200 (PC0054_00330) plsX 37005..37997 (+) 993 WP_000717456.1 phosphate acyltransferase PlsX -
  R8625_RS00205 (PC0054_00340) - 38003..38236 (+) 234 WP_000136447.1 acyl carrier protein -
  R8625_RS00210 (PC0054_00350) - 38273..38572 (+) 300 Protein_34 transposase family protein -
  R8625_RS00215 (PC0054_00360) cipB 38775..38933 (+) 159 WP_050214718.1 bacteriocin class II family protein Regulator
  R8625_RS00220 - 38936..39061 (+) 126 WP_001842754.1 PncF family bacteriocin immunity protein -
  R8625_RS00225 (PC0054_00370) comA 39647..41800 (+) 2154 WP_050214717.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=82387 R8625_RS00195 WP_000616164.1 36238..37008(+) (recO) [Streptococcus pneumoniae strain PZ900700054]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=82387 R8625_RS00195 WP_000616164.1 36238..37008(+) (recO) [Streptococcus pneumoniae strain PZ900700054]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGAATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992