Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   C12CBH8_RS05030 Genome accession   NZ_AP023321
Coordinates   1079858..1080559 (+) Length   233 a.a.
NCBI ID   WP_090263444.1    Uniprot ID   A0A7I8D0M9
Organism   Solibaculum mannosilyticum strain 12CBH8     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1074858..1085559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C12CBH8_RS05005 (C12CBH8_09610) - 1076343..1076960 (-) 618 WP_215533678.1 TetR/AcrR family transcriptional regulator -
  C12CBH8_RS05010 (C12CBH8_09620) - 1077176..1077457 (-) 282 WP_090263686.1 hypothetical protein -
  C12CBH8_RS05015 (C12CBH8_09630) - 1077463..1078233 (-) 771 WP_215533679.1 ABC transporter permease -
  C12CBH8_RS05020 (C12CBH8_09640) - 1078230..1078943 (-) 714 WP_246441753.1 ABC transporter permease -
  C12CBH8_RS05025 (C12CBH8_09650) - 1078952..1079707 (-) 756 WP_090263446.1 ABC transporter ATP-binding protein -
  C12CBH8_RS05030 (C12CBH8_09660) scnR 1079858..1080559 (+) 702 WP_090263444.1 response regulator transcription factor Regulator
  C12CBH8_RS05035 (C12CBH8_09670) - 1080562..1081953 (+) 1392 WP_215533681.1 HAMP domain-containing sensor histidine kinase -
  C12CBH8_RS05040 (C12CBH8_09680) - 1082027..1082983 (+) 957 WP_099321888.1 LysR family transcriptional regulator -
  C12CBH8_RS05045 (C12CBH8_09690) - 1083232..1084536 (+) 1305 WP_215533682.1 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein -
  C12CBH8_RS05050 (C12CBH8_09710) - 1084760..1085092 (+) 333 WP_215533683.1 PadR family transcriptional regulator -
  C12CBH8_RS05055 (C12CBH8_09720) - 1085085..1085456 (+) 372 WP_099321890.1 DUF1048 domain-containing protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26607.67 Da        Isoelectric Point: 4.8321

>NTDB_id=82378 C12CBH8_RS05030 WP_090263444.1 1079858..1080559(+) (scnR) [Solibaculum mannosilyticum strain 12CBH8]
MDYSYLKQKKVLLVDDEKEILDMVSDFLRKDGYTQVRTAGTMREAVIVAKEWDPDFAILDVMLPDGDGFSLLEQLRIFTK
IPVLFLTARGEDEDKIHGLGLGADDYMVKPFLDQELLLRVGIILRRYYKEENPLVQLAGSQIDFSRAEVVKNGEHFSLTA
KEYEILQGLYRNAGRIVTIDQLCEAAWGENPYGYENSLMAHIRRIREKIEANPSRPVSLITVKGLGYKLMLEG

Nucleotide


Download         Length: 702 bp        

>NTDB_id=82378 C12CBH8_RS05030 WP_090263444.1 1079858..1080559(+) (scnR) [Solibaculum mannosilyticum strain 12CBH8]
ATGGATTACAGCTATTTAAAACAGAAAAAAGTCCTCCTCGTGGACGACGAGAAGGAAATCTTAGATATGGTCTCTGATTT
TCTGAGGAAAGATGGTTATACACAAGTCCGAACAGCAGGCACAATGAGGGAAGCGGTTATAGTTGCAAAAGAATGGGATC
CGGATTTTGCCATCTTAGATGTGATGCTGCCGGACGGAGACGGCTTTTCCCTTTTAGAACAGCTGAGAATATTTACAAAA
ATACCAGTCCTGTTTTTGACAGCCCGCGGAGAGGACGAGGATAAAATTCACGGCCTGGGTCTGGGTGCGGACGATTATAT
GGTAAAACCGTTTCTGGATCAGGAATTGCTATTGCGAGTCGGGATTATCCTTCGGCGGTATTATAAAGAGGAAAACCCAT
TGGTCCAGCTGGCGGGAAGCCAGATTGATTTTTCACGAGCTGAGGTGGTTAAAAACGGGGAACATTTCTCGCTCACCGCC
AAAGAGTATGAGATTCTGCAGGGCCTCTACCGGAATGCTGGACGCATTGTGACGATCGATCAGCTGTGCGAGGCTGCTTG
GGGGGAAAATCCGTACGGGTATGAGAACAGTCTGATGGCACATATCCGCCGAATCCGTGAAAAGATTGAAGCCAACCCTT
CCCGGCCGGTGTCCTTGATTACCGTCAAGGGCCTAGGGTATAAACTGATGCTGGAGGGCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(11-119)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7I8D0M9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.218

98.283

0.494
  micA Streptococcus pneumoniae Cp1015

39.655

99.571

0.395
  vicR Streptococcus mutans UA159

39.301

98.283

0.386

Multiple sequence alignment