Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QHF92_RS12665 Genome accession   NZ_CP123994
Coordinates   2527433..2528503 (-) Length   356 a.a.
NCBI ID   WP_060399020.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain M3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2522433..2533503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHF92_RS12620 (QHF92_12620) tapA 2522911..2523675 (-) 765 WP_060399014.1 amyloid fiber anchoring/assembly protein TapA -
  QHF92_RS12625 (QHF92_12625) - 2523948..2524274 (+) 327 WP_029316858.1 YqzG/YhdC family protein -
  QHF92_RS12630 (QHF92_12630) - 2524316..2524495 (-) 180 WP_003236949.1 YqzE family protein -
  QHF92_RS12635 (QHF92_12635) comGG 2524566..2524940 (-) 375 WP_060399015.1 competence type IV pilus minor pilin ComGG Machinery gene
  QHF92_RS12640 (QHF92_12640) comGF 2524941..2525324 (-) 384 WP_060399016.1 competence type IV pilus minor pilin ComGF Machinery gene
  QHF92_RS12645 (QHF92_12645) comGE 2525350..2525694 (-) 345 WP_060399017.1 competence type IV pilus minor pilin ComGE Machinery gene
  QHF92_RS12650 (QHF92_12650) comGD 2525678..2526109 (-) 432 WP_060399018.1 competence type IV pilus minor pilin ComGD Machinery gene
  QHF92_RS12655 (QHF92_12655) comGC 2526099..2526395 (-) 297 WP_003236957.1 comG operon protein ComGC Machinery gene
  QHF92_RS12660 (QHF92_12660) comGB 2526409..2527446 (-) 1038 WP_060399019.1 competence type IV pilus assembly protein ComGB Machinery gene
  QHF92_RS12665 (QHF92_12665) comGA 2527433..2528503 (-) 1071 WP_060399020.1 competence protein ComGA Machinery gene
  QHF92_RS12670 (QHF92_12670) - 2528466..2528741 (-) 276 WP_060399021.1 hypothetical protein -
  QHF92_RS12675 (QHF92_12675) - 2528719..2529129 (-) 411 WP_060399022.1 CBS domain-containing protein -
  QHF92_RS12680 (QHF92_12680) corA 2529192..2530136 (-) 945 WP_003236968.1 magnesium transporter CorA -
  QHF92_RS12685 (QHF92_12685) - 2530280..2531608 (+) 1329 WP_060399023.1 hemolysin family protein -
  QHF92_RS12690 (QHF92_12690) - 2531668..2532507 (-) 840 WP_003236972.1 STAS domain-containing protein -
  QHF92_RS12700 (QHF92_12700) mgsR 2532732..2533109 (-) 378 WP_003236975.1 transcriptional regulator MgsR -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40470.66 Da        Isoelectric Point: 9.1889

>NTDB_id=823734 QHF92_RS12665 WP_060399020.1 2527433..2528503(-) (comGA) [Bacillus inaquosorum strain M3]
MDSIEKISRTLIEEAYITKASDIHIVPRERDAIIHFRVDHALLKKRNMKKEDCVRLISHFKFLSAMDIGERRKPQNGSLT
LKLEEGHVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSTGLKAILRHDPDMIILGEIRDAETAKIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIQQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRSTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHETD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=823734 QHF92_RS12665 WP_060399020.1 2527433..2528503(-) (comGA) [Bacillus inaquosorum strain M3]
TTGGATTCAATAGAAAAGATAAGCAGAACCTTGATTGAAGAGGCATATATAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGTGATGCCATCATTCATTTTCGGGTTGATCATGCATTGTTGAAAAAAAGGAACATGAAAAAAGAAGACTGTG
TAAGACTGATTTCACATTTTAAATTTCTCTCAGCGATGGACATAGGGGAAAGACGAAAGCCGCAAAATGGTTCGCTTACG
TTAAAGCTTGAAGAGGGACATGTTCATTTAAGAATGTCAACGCTCCCTACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCTCAATATAATATCCCTTCGATTGATAAACTGTCATTATTTCCGAAGACAGGAGCCACCTTGCTCTCATTTTTAA
AACATTCCCACGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACCACTACACTATACTCTCTTGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACACTGGAGGACCCTGTTGAAACAAGGGACGAGGATGTTCTTCAGGTGCA
GGTGAATGAAAAAGCGGGTGTGACATATTCCACAGGGCTGAAGGCTATTTTGCGCCATGACCCGGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCCAAAATTGCGGTGCGGGCAGCGATGACGGGGCATTTGGTGCTGACGAGCCTTCAC
ACGAGAGATGCGAAGGGCGCGATTTACAGGCTGCTTGAATTCGGCATCAATATGAATGAAATCCAACAGACCGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCGGTGTATTGCCGCCAGTCAC
GAAGCACCAGGAGAGCAAGCGTTTATGAGCTTCTTTACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAGTATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTTGGCTACTTGACGACAAACAATTA
TGACCGGTGGGTTTATCATGAAACAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

96.348

100

0.963
  pilB Glaesserella parasuis strain SC1401

43.878

82.584

0.362